myRT

myRT report for GCA_000964605.1_ASM96460v1

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Seq: LANN01000045.1 Orientia tsutsugamushi str. Kato PP kato.contig.44_1, whole genome shotgun sequence (10423 bp)
Overview 1 RT 1: 4733-7965 bp Neighborhood of RT #1 [4733, 7973] RVT-GII ANK Feature: gene Location: 4733-4849 bp Feature: gene Location: 4912-5166 bp Feature: gene Location: 6581-6799 bp Ori: KJV54419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6587-6746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6587-6746 bp Feature: gene Location: 7158-7376 bp Feature: gene Location: 7605-7973 bp Ori: KJV54425.1 Feature: domain Description: ANK Location: 7659-7965 bp Feature: domain Description: ANK Location: 7659-7965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ANK (smart00248)

Seq: LANN01000033.1 Orientia tsutsugamushi str. Kato PP kato.contig.32_1, whole genome shotgun sequence (15410 bp)
Overview 1 RT 1: 12643-15118 bp Neighborhood of RT #1 [12643, 15120] PRK14341 RVT-GII Feature: gene Location: 12643-13269 bp Ori: KJV54749.1 Gene: lipB Feature: domain Description: PRK14341 Location: 12646-13267 bp Feature: domain Description: PRK14341 Location: 12 646-132 67 bp Feature: gene Location: 14173-14334 bp Feature: gene Location: 14434-15120 bp Ori: KJV54758.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14719-15118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14719-15118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14341 (lipoyl(octanoyl) transferase LipB), RVT-GII

Seq: LANN01000007.1 Orientia tsutsugamushi str. Kato PP kato.contig.6_1, whole genome shotgun sequence (34795 bp)
Overview 1 RT 1: 32956-34680 bp Neighborhood of RT #1 [32956, 34784] PRK08159 RVT-GII Feature: gene Location: 32956-33753 bp Ori: KJV56318.1 Gene: fabI Feature: domain Description: PRK08159 Location: 32983-33745 bp Feature: domain Description: PRK08159 Location: 3 2983 -3 3 745 bp Feature: gene Location: 33952-34080 bp Feature: gene Location: 34491-34784 bp Ori: KJV56324.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34497-34680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4497-3 4680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08159 (enoyl- reductase FabI), RVT-GII

Seq: LANN01000110.1 Orientia tsutsugamushi str. Kato PP kato.contig.110_1, whole genome shotgun sequence (2850 bp)
Overview 1 RT 1: 12-201 bp Neighborhood of RT #1 [12, 368] RVT-GII Feature: gene Location: 12-368 bp Ori: KJV51130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18-201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18-201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LANN01000004.1 Orientia tsutsugamushi str. Kato PP kato.contig.3_1, whole genome shotgun sequence (40820 bp)
Overview 1 RT 1: 30809-34579 bp Neighborhood of RT #1 [30809, 34579] group_II_RT_mat RVT-GII group_II_RT_mat RVT-GII Feature: gene Location: 30809-30937 bp Feature: gene Location: 31235-31540 bp Ori: KJV56617.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 31244-31523 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 31244-315 23 bp Feature: gene Location: 31525-32061 bp Ori: KJV56610.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31528-32032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315 28-32032 bp Feature: gene Location: 32055-32372 bp Ori: KJV56624.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 32178-32349 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 32178-32349 bp Feature: gene Location: 32896-33162 bp Ori: KJV56616.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33019-33157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33019-3315 7 bp Feature: gene Location: 33596-33733 bp Feature: gene Location: 34436-34579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: LANN01000040.1 Orientia tsutsugamushi str. Kato PP kato.contig.39_1, whole genome shotgun sequence (11626 bp)
Overview 1 RT 1: 1-2216 bp Neighborhood of RT #1 [1, 2257] RVT_N RVT-GII TraA_Ti TraA_Ti Feature: gene Location: 1-557 bp Ori: KJV54549.1 Feature: domain Description: RVT_N Location: 58-304 bp Feature: domain Description: RVT_N Location: 58-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-553 bp Feature: gene Location: 1239-1511 bp Ori: KJV54551.1 Feature: domain Description: TraA_Ti Location: 1260-1503 bp Feature: domain Description: TraA_Ti Location: 126 0-1503 bp Feature: gene Location: 1799-2257 bp Ori: KJV54544.1 Feature: domain Description: TraA_Ti Location: 1808-2216 bp Feature: domain Description: TraA_Ti Location: 1808-2216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, TraA_Ti (TIGR02768)

Seq: LANN01000062.1 Orientia tsutsugamushi str. Kato PP kato.contig.61_1, whole genome shotgun sequence (7205 bp)
Overview 1 RT 1: 3639-6188 bp Neighborhood of RT #1 [3639, 6188] MidA RVT-GII Feature: gene Location: 3639-3854 bp Feature: gene Location: 3899-5053 bp Ori: KJV53196.1 Feature: domain Description: MidA Location: 3902-4991 bp Feature: domain Description: MidA Location: 3902-4991 bp Feature: gene Location: 5637-5759 bp Ori: KJV53197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5643-5757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5643-57 57 bp Feature: gene Location: 6036-6188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MidA (COG1565), RVT-GII

Seq: LANN01000013.1 Orientia tsutsugamushi str. Kato PP kato.contig.12_1, whole genome shotgun sequence (30283 bp)
Overview 1 RT 1: 5710-13908 bp Neighborhood of RT #1 [5710, 13934] CcmF CorB RVT-GII SodA sucA Feature: gene Location: 5710-7572 bp Ori: KJV55828.1 Feature: domain Description: CcmF Location: 5713-7546 bp Feature: domain Description: CcmF Location: 5713-7546 bp Feature: gene Location: 7562-8830 bp Ori: KJV55845.1 Feature: domain Description: CorB Location: 7574-8807 bp Feature: domain Description: CorB Location: 7574-8 8 07 bp Feature: gene Location: 10091-10261 bp Ori: KJV55835.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10094-10241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10094-10241 bp Feature: gene Location: 10361-11002 bp Ori: KJV55847.1 Gene: sodB Feature: domain Description: SodA Location: 10400-10991 bp Feature: domain Description: SodA Location: 10400-10991 bp Feature: gene Location: 11043-13934 bp Ori: KJV55841.1 Gene: sucA Feature: domain Description: sucA Location: 11064-13908 bp Feature: domain Description: sucA Location: 11064-13908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmF (COG1138), CorB (COG4536), RVT-GII, SodA (COG0605), sucA (PRK09404)

Seq: LANN01000001.1 Orientia tsutsugamushi str. Kato PP kato.contig.0_1, whole genome shotgun sequence (96442 bp)
Overview 1 RT 1: 24445-27189 bp Neighborhood of RT #1 [24445, 27260] DDE_Tnp_1_3 RVT-GII UPF0093 hemH Feature: gene Location: 24445-24753 bp Ori: KJV56994.1 Feature: domain Description: DDE_Tnp_1_3 Location: 24553-24736 bp Feature: domain Description: DDE_Tnp_1_3 Location: 24553-24736 bp Feature: gene Location: 24828-24956 bp Feature: gene Location: 25138-25365 bp Ori: KJV56998.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25150-25360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25150-25360 bp Feature: gene Location: 25783-26217 bp Ori: KJV56959.1 Feature: domain Description: UPF0093 Location: 25786-26209 bp Feature: domain Description: UPF009 3 Location: 25786-26209 bp Feature: gene Location: 26226-27260 bp Ori: KJV56978.1 Gene: hemH Feature: domain Description: hemH Location: 26238-27189 bp Feature: domain Description: hemH Location: 26238-27189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT-GII, UPF0093 (pfam03653), hemH (TIGR00109)

Seq: LANN01000017.1 Orientia tsutsugamushi str. Kato PP kato.contig.16_1, whole genome shotgun sequence (26347 bp)
Overview 1 RT 1: 13446-17965 bp Neighborhood of RT #1 [13446, 18009] PRK13737 RVT-GII ANK ANK Feature: gene Location: 13446-13619 bp Feature: gene Location: 14371-14676 bp Ori: KJV55557.1 Feature: domain Description: PRK13737 Location: 14377-14668 bp Feature: domain Description: PRK13737 Location: 14377-14668 bp Feature: gene Location: 15306-15632 bp Ori: KJV55549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15366-15630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15366-15630 bp Feature: gene Location: 15793-16875 bp Feature: gene Location: 17353-18009 bp Ori: KJV55552.1 Feature: domain Description: ANK Location: 17368-17602 bp Feature: domain Description: ANK Location: 17368-17602 bp Feature: domain Description: ANK Location: 17734-17965 bp Feature: domain Description: ANK Location: 17734-17965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13737 (conjugal transfer pilus assembly protein TraU; Provisional), RVT-GII, ANK (smart00248)