myRT

myRT report for GCA_000964615.1_ASM96461v1

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Seq: LANO01000001.1 Orientia tsutsugamushi str. Gilliam got.contig.0_1, whole genome shotgun sequence (136554 bp)
Overview 1 RT 1: 26797-28272 bp 2 RT 2: 81857-85803 bp Neighborhood of RT #1 [26797, 28277] PRK08159 RVT-GII Neighborhood of RT #2 [81857, 85997] TraA_Ti TraA_Ti RVT_N RVT-GII TraD Feature: gene Location: 26797-27594 bp Ori: KJV54244.1 Gene: fabI Feature: domain Description: PRK08159 Location: 26824-27586 bp Feature: domain Description: PRK081 59 Location: 26824-27586 bp Feature: gene Location: 27732-27923 bp Feature: gene Location: 28011-28277 bp Ori: KJV54203.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28134-28272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 34-28272 bp Feature: gene Location: 81857-82474 bp Ori: KJV54322.1 Feature: domain Description: TraA_Ti Location: 81866-82385 bp Feature: domain Description: TraA_Ti Location: 81 866-82385 bp Feature: gene Location: 82715-83017 bp Ori: KJV54267.1 Feature: domain Description: TraA_Ti Location: 82718-83000 bp Feature: domain Description: TraA_Ti Location: 8271 8-83000 bp Feature: gene Location: 83757-84704 bp Ori: KJV54233.1 Feature: domain Description: RVT_N Location: 83763-83922 bp Feature: domain Description: RVT_N Location: 83763-83922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83970-84615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83970-8461 5 bp Feature: gene Location: 84958-85122 bp Feature: gene Location: 85542-85997 bp Ori: KJV54172.1 Feature: domain Description: TraD Location: 85626-85803 bp Feature: domain Description: TraD Location: 85626-85803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08159 (enoyl- reductase FabI), RVT-GII, TraA_Ti (TIGR02768), RVT_N (pfam13655), TraD (pfam06412)

Seq: LANO01000006.1 Orientia tsutsugamushi str. Gilliam got.contig.5_1, whole genome shotgun sequence (53107 bp)
Overview 1 RT 1: 42257-44457 bp Neighborhood of RT #1 [42257, 44457] DDE_3 COG3415 RVT-GII Feature: gene Location: 42257-42487 bp Ori: KJV53544.1 Feature: domain Description: DDE_3 Location: 42269-42452 bp Feature: domain Description: DDE_3 Location: 42 2 69-42 452 bp Feature: gene Location: 42501-42776 bp Ori: KJV53546.1 Feature: domain Description: COG3415 Location: 42504-42756 bp Feature: domain Description: COG3415 Location: 42 504-42 756 bp Feature: gene Location: 43308-43463 bp Ori: KJV53573.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43368-43458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43368-43458 bp Feature: gene Location: 43829-44095 bp Feature: gene Location: 44191-44457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), COG3415 (Transposase ), RVT-GII

Seq: LANO01000012.1 Orientia tsutsugamushi str. Gilliam got.contig.11_1, whole genome shotgun sequence (37938 bp)
Overview 1 RT 1: 11738-14277 bp Neighborhood of RT #1 [11738, 14348] RVT-GII Peptidase_S66 Feature: gene Location: 11738-11842 bp Feature: gene Location: 12103-12249 bp Feature: gene Location: 12251-12490 bp Ori: KJV53104.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12263-12485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12263 -12485 bp Feature: gene Location: 13162-13260 bp Feature: gene Location: 13350-14348 bp Ori: KJV53107.1 Feature: domain Description: Peptidase_S66 Location: 13428-14277 bp Feature: domain Description: Peptidase_S66 Location: 13 428-14277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Peptidase_S66 (pfam02016)

Seq: LANO01000019.1 Orientia tsutsugamushi str. Gilliam got.contig.18_1, whole genome shotgun sequence (29133 bp)
Overview 1 RT 1: 734-2148 bp Neighborhood of RT #1 [734, 2153] RVT-GII MviN Feature: gene Location: 734-931 bp Ori: KJV52638.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 0-926 bp Feature: gene Location: 1194-1574 bp Feature: gene Location: 1947-2153 bp Ori: KJV52661.1 Feature: domain Description: MviN Location: 1950-2148 bp Feature: domain Description: MviN Location: 1950-214 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MviN (COG0728)

Seq: LANO01000027.1 Orientia tsutsugamushi str. Gilliam got.contig.26_1, whole genome shotgun sequence (23659 bp)
Overview 1 RT 1: 19360-22750 bp Neighborhood of RT #1 [19360, 22750] ANK ANK RVT-GII RVT-GII Arm-DNA-bind_3 Feature: gene Location: 19360-19884 bp Ori: KJV52266.1 Feature: domain Description: ANK Location: 19384-19759 bp Feature: domain Description: ANK Location: 19384-1975 9 bp Feature: gene Location: 19862-20005 bp Ori: KJV52249.1 Feature: domain Description: ANK Location: 19871-19985 bp Feature: domain Description: ANK Location: 19871-19985 bp Feature: gene Location: 20518-21006 bp Ori: KJV52257.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20533-20839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 33-20839 bp Feature: gene Location: 20988-21380 bp Ori: KJV52247.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20997-21375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20997-21375 bp Feature: gene Location: 21978-22256 bp Ori: KJV52244.1 Feature: domain Description: Arm-DNA-bind_3 Location: 22071-22251 bp Feature: domain Description: Arm-DNA-bind_3 Location: 22071-2225 1 bp Feature: gene Location: 22475-22750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT-GII, Arm-DNA-bind_3 (pfam13356)

Seq: LANO01000004.1 Orientia tsutsugamushi str. Gilliam got.contig.3_1, whole genome shotgun sequence (58247 bp)
Overview 1 RT 1: 9924-12567 bp Neighborhood of RT #1 [9924, 12773] RVT-GII GIIM HTH_XRE Feature: gene Location: 9924-10205 bp Feature: gene Location: 10408-10572 bp Feature: gene Location: 10744-11763 bp Ori: KJV53810.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11029-11716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11029-11716 bp Feature: gene Location: 11815-12072 bp Ori: KJV53743.1 Feature: domain Description: GIIM Note: maturase Location: 11839-12004 bp Feature: domain Description: GIIM Note: maturase Location: 11839-12004 bp Feature: gene Location: 12333-12773 bp Ori: KJV53751.1 Feature: domain Description: HTH_XRE Location: 12399-12567 bp Feature: domain Description: HTH_XRE Location: 12399-1256 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: LANO01000008.1 Orientia tsutsugamushi str. Gilliam got.contig.7_1, whole genome shotgun sequence (48572 bp)
Overview 1 RT 1: 42224-44998 bp Neighborhood of RT #1 [42224, 45021] GIIM RVT-GII ANK Feature: gene Location: 42224-42355 bp Feature: gene Location: 42945-43202 bp Ori: KJV53415.1 Feature: domain Description: GIIM Note: maturase Location: 42969-43134 bp Feature: domain Description: GIIM Note: maturase Location: 42969-43134 bp Feature: gene Location: 43254-44273 bp Ori: KJV53384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43539-44226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43539-44226 bp Feature: gene Location: 44458-44610 bp Feature: gene Location: 44845-45021 bp Ori: KJV53373.1 Feature: domain Description: ANK Location: 44851-44998 bp Feature: domain Description: ANK Location: 44851-44998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, ANK (smart00248)