myRT

myRT report for GCA_000964835.1_ASM96483v1

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Seq: LANZ01000174.1 Orientia tsutsugamushi str. UT76 ut76.contig.173_1, whole genome shotgun sequence (6445 bp)
Overview 1 RT 1: 2351-6383 bp Neighborhood of RT #1 [2351, 6383] ANK Lipase_3 RVT-GII Feature: gene Location: 2351-2599 bp Ori: KJV73492.1 Feature: domain Description: ANK Location: 2384-2579 bp Feature: domain Description: ANK Location: 2384-2579 bp Feature: gene Location: 3602-4795 bp Ori: KJV73495.1 Feature: domain Description: Lipase_3 Location: 3929-4097 bp Feature: domain Description: Lipase_3 Location: 3929-4097 bp Feature: gene Location: 5561-5800 bp Ori: KJV73491.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5573-5795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5573-5795 bp Feature: gene Location: 5970-6383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), Lipase_3 (pfam01764), RVT-GII

Seq: LANZ01000172.1 Orientia tsutsugamushi str. UT76 ut76.contig.171_1, whole genome shotgun sequence (6490 bp)
Overview 1 RT 1: 1-1226 bp Neighborhood of RT #1 [1, 1243] RVT-GII SpoT ANK ANK Feature: gene Location: 1-160 bp Ori: KJV73583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-157 bp Feature: gene Location: 556-753 bp Ori: KJV73580.1 Feature: domain Description: SpoT Location: 574-736 bp Feature: domain Description: SpoT Location: 574-736 bp Feature: gene Location: 791-1243 bp Ori: KJV73579.1 Feature: domain Description: ANK Location: 821-1049 bp Feature: domain Description: ANK Location: 82 1-1049 bp Feature: domain Description: ANK Location: 1094-1226 bp Feature: domain Description: ANK Location: 1094-12 2 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SpoT (COG0317), ANK (smart00248)

Seq: LANZ01000171.1 Orientia tsutsugamushi str. UT76 ut76.contig.170_1, whole genome shotgun sequence (6531 bp)
Overview 1 RT 1: 182-3172 bp Neighborhood of RT #1 [182, 3189] MidA RVT-GII TrwB_AAD_bind COG3415 Feature: gene Location: 182-583 bp Ori: KJV73630.1 Feature: domain Description: MidA Location: 185-563 bp Feature: domain Description: MidA Location: 185-563 bp Feature: gene Location: 870-980 bp Feature: gene Location: 1107-1295 bp Ori: KJV73631.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155-1293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155-1293 bp Feature: gene Location: 2039-2254 bp Ori: KJV73626.1 Feature: domain Description: TrwB_AAD_bind Location: 2099-2252 bp Feature: domain Description: TrwB_AAD_bind Location: 2099-2252 bp Feature: gene Location: 2815-3189 bp Ori: KJV73625.1 Feature: domain Description: COG3415 Location: 2818-3172 bp Feature: domain Description: COG3 415 Location: 2818-3 172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MidA (COG1565), RVT-GII, TrwB_AAD_bind (pfam10412), COG3415 (Transposase )

Seq: LANZ01000075.1 Orientia tsutsugamushi str. UT76 ut76.contig.74_1, whole genome shotgun sequence (10460 bp)
Overview 1 RT 1: 4634-8027 bp Neighborhood of RT #1 [4634, 8027] RVT-GII ANK ANK Feature: gene Location: 4634-4888 bp Feature: gene Location: 6057-6314 bp Feature: gene Location: 6405-6623 bp Ori: KJV80673.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6411-6570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 11-6570 bp Feature: gene Location: 6982-7845 bp Ori: KJV80680.1 Feature: domain Description: ANK Location: 6988-7309 bp Feature: domain Description: ANK Location: 6988-7309 bp Feature: domain Description: ANK Location: 7354-7666 bp Feature: domain Description: ANK Location: 7354 -7666 bp Feature: gene Location: 7863-8027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ANK (smart00248)

Seq: LANZ01000017.1 Orientia tsutsugamushi str. UT76 ut76.contig.16_1, whole genome shotgun sequence (25364 bp)
Overview 1 RT 1: 5111-10799 bp Neighborhood of RT #1 [5111, 10807] MidA MidA RVT-GII TrwB_AAD_bind RVT-GII PRK08159 Feature: gene Location: 5111-5473 bp Ori: KJV93092.1 Feature: domain Description: MidA Location: 5114-5411 bp Feature: domain Description: MidA Location: 5 114-5 411 bp Feature: gene Location: 5536-6264 bp Ori: KJV93084.1 Feature: domain Description: MidA Location: 5539-6253 bp Feature: domain Description: MidA Location: 5 5 39-625 3 bp Feature: gene Location: 6789-6977 bp Ori: KJV93076.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6837-6975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6837-6975 bp Feature: gene Location: 7716-8009 bp Ori: KJV93074.1 Feature: domain Description: TrwB_AAD_bind Location: 7854-8007 bp Feature: domain Description: TrwB_AAD_bind Location: 785 4-8007 bp Feature: gene Location: 9424-9591 bp Ori: KJV93094.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9451-9586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 945 1-95 86 bp Feature: gene Location: 9681-9806 bp Feature: gene Location: 10010-10807 bp Ori: KJV93073.1 Feature: domain Description: PRK08159 Location: 10037-10799 bp Feature: domain Description: PRK0815 9 Location: 10037-10799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MidA (COG1565), RVT-GII, TrwB_AAD_bind (pfam10412), PRK08159 (enoyl- reductase FabI)

Seq: LANZ01000032.1 Orientia tsutsugamushi str. UT76 ut76.contig.31_1, whole genome shotgun sequence (18500 bp)
Overview 1 RT 1: 5844-9827 bp Neighborhood of RT #1 [5844, 9838] ANK ANK RVT-GII PRK13737 TraC-F-type TraW Feature: gene Location: 5844-6530 bp Ori: KJV88800.1 Feature: domain Description: ANK Location: 5889-6123 bp Feature: domain Description: ANK Location: 5889-6 123 bp Feature: domain Description: ANK Location: 6252-6486 bp Feature: domain Description: ANK Location: 6 252-6 486 bp Feature: gene Location: 7008-8069 bp Feature: gene Location: 8259-8534 bp Ori: KJV88791.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8268-8532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826 8-8532 bp Feature: gene Location: 8664-8969 bp Ori: KJV88790.1 Feature: domain Description: PRK13737 Location: 8670-8961 bp Feature: domain Description: PRK13737 Location: 86 70-896 1 bp Feature: gene Location: 9524-9838 bp Ori: KJV88807.1 Feature: domain Description: TraC-F-type Location: 9530-9656 bp Feature: domain Description: TraC-F-type Location: 9530-96 56 bp Feature: domain Description: TraW Location: 9677-9827 bp Feature: domain Description: TraW Location: 96 77-9827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT-GII, PRK13737 (conjugal transfer pilus assembly protein TraU; Provisional), TraC-F-type (TIGR02746), TraW (TIGR02743)

Seq: LANZ01000293.1 Orientia tsutsugamushi str. UT76 ut76.contig.292_1, whole genome shotgun sequence (3900 bp)
Overview 1 RT 1: 1-3257 bp Neighborhood of RT #1 [1, 3257] TRX_reduct RVT-GII DDE_Tnp_1_3 Feature: gene Location: 1-768 bp Ori: KJV70255.1 Feature: domain Description: TRX_reduct Location: 4-754 bp Feature: domain Description: TRX_reduct Location: 4-7 54 bp Feature: gene Location: 1463-2398 bp Ori: KJV70252.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544-2231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544-2231 bp Feature: gene Location: 2522-2917 bp Ori: KJV70254.1 Feature: domain Description: DDE_Tnp_1_3 Location: 2525-2810 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2525-2810 bp Feature: gene Location: 3126-3257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TRX_reduct (TIGR01292), RVT-GII, DDE_Tnp_1_3 (pfam13612)

Seq: LANZ01000034.1 Orientia tsutsugamushi str. UT76 ut76.contig.33_1, whole genome shotgun sequence (16866 bp)
Overview 1 RT 1: 350-4626 bp Neighborhood of RT #1 [350, 4649] Lipase_3 RVT-GII MviN Feature: gene Location: 350-1543 bp Ori: KJV88723.1 Feature: domain Description: Lipase_3 Location: 677-845 bp Feature: domain Description: Lipase_3 Location: 677-8 45 bp Feature: gene Location: 2309-2548 bp Ori: KJV88725.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321-2543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321-2543 bp Feature: gene Location: 2718-3098 bp Feature: gene Location: 3135-4649 bp Ori: KJV88739.1 Gene: mviN Feature: domain Description: MviN Location: 3141-4626 bp Feature: domain Description: MviN Location: 3141-4626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipase_3 (pfam01764), RVT-GII, MviN (COG0728)

Seq: LANZ01000046.1 Orientia tsutsugamushi str. UT76 ut76.contig.45_1, whole genome shotgun sequence (12854 bp)
Overview 1 RT 1: 478-1937 bp Neighborhood of RT #1 [478, 1951] RVT-GII TraF Feature: gene Location: 478-612 bp Feature: gene Location: 787-1068 bp Ori: KJV86713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79 0-1030 bp Feature: gene Location: 1226-1390 bp Feature: gene Location: 1652-1951 bp Ori: KJV86716.1 Feature: domain Description: TraF Location: 1670-1937 bp Feature: domain Description: TraF Location: 1670-19 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraF (TIGR02739)

Seq: LANZ01000006.1 Orientia tsutsugamushi str. UT76 ut76.contig.5_1, whole genome shotgun sequence (39199 bp)
Overview 1 RT 1: 16581-19991 bp Neighborhood of RT #1 [16581, 19991] RVT-GII group_II_RT_mat Feature: gene Location: 16581-16691 bp Feature: gene Location: 16693-16842 bp Feature: gene Location: 17577-17843 bp Ori: KJV97006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17592-17838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17592-17838 bp Feature: gene Location: 17815-18054 bp Ori: KJV97000.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 17827-18040 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17827-18040 bp Feature: gene Location: 19089-19991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)