myRT

myRT report for GCA_000964855.1_ASM96485v1

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Seq: LAOA01000143.1 Orientia tsutsugamushi str. TA716 ta716.contig.142_1, whole genome shotgun sequence (5811 bp)
Overview 1 RT 1: 706-5761 bp Neighborhood of RT #1 [706, 5811] ANK ANK RVT_N RVT-GII TraA_Ti Feature: gene Location: 706-1392 bp Ori: KJV71412.1 Feature: domain Description: ANK Location: 751-985 bp Feature: domain Description: ANK Location: 751 -985 bp Feature: domain Description: ANK Location: 1117-1348 bp Feature: domain Description: ANK Location: 1 1 1 7-1 348 bp Feature: gene Location: 1870-2952 bp Feature: gene Location: 3005-3736 bp Ori: KJV71410.1 Feature: domain Description: RVT_N Location: 3062-3308 bp Feature: domain Description: RVT_N Location: 3062-3308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356-3728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3356-3728 bp Feature: gene Location: 4417-5811 bp Ori: KJV71411.1 Feature: domain Description: TraA_Ti Location: 4438-5761 bp Feature: domain Description: TraA_Ti Location: 4438-5761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT_N (pfam13655), RVT-GII, TraA_Ti (TIGR02768)

Seq: LAOA01000008.1 Orientia tsutsugamushi str. TA716 ta716.contig.7_1, whole genome shotgun sequence (35429 bp)
Overview 1 RT 1: 17341-22076 bp Neighborhood of RT #1 [17341, 22076] sucA PRK10543 RVT-GII Feature: gene Location: 17341-20232 bp Ori: KJV77154.1 Gene: sucA Feature: domain Description: sucA Location: 17362-20206 bp Feature: domain Description: sucA Location: 17362 -2 02 06 bp Feature: gene Location: 20273-20914 bp Ori: KJV77182.1 Gene: sodB Feature: domain Description: PRK10543 Location: 20315-20897 bp Feature: domain Description: PRK10543 Location: 2 0315-2 0897 bp Feature: gene Location: 21014-21184 bp Ori: KJV77187.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21017-21167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1017-2 1167 bp Feature: gene Location: 21796-21930 bp Feature: gene Location: 21951-22076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sucA (PRK09404), PRK10543 (superoxide dismutase ), RVT-GII

Seq: LAOA01000017.1 Orientia tsutsugamushi str. TA716 ta716.contig.16_1, whole genome shotgun sequence (23732 bp)
Overview 1 RT 1: 20781-22609 bp Neighborhood of RT #1 [20781, 22614] RVT-GII RVT-GII Feature: gene Location: 20781-20897 bp Feature: gene Location: 21050-21220 bp Feature: gene Location: 22122-22388 bp Ori: KJV76660.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22134-22293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213 4-22293 bp Feature: gene Location: 22360-22614 bp Ori: KJV76644.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22369-22609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 69-22609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LAOA01000050.1 Orientia tsutsugamushi str. TA716 ta716.contig.49_1, whole genome shotgun sequence (10638 bp)
Overview 1 RT 1: 7267-10289 bp Neighborhood of RT #1 [7267, 10297] ANK ANK RVT_N RVT-GII Feature: gene Location: 7267-7953 bp Ori: KJV74569.1 Feature: domain Description: ANK Location: 7312-7546 bp Feature: domain Description: ANK Location: 7312-754 6 bp Feature: domain Description: ANK Location: 7678-7909 bp Feature: domain Description: ANK Location: 7678-7909 bp Feature: gene Location: 8431-9513 bp Feature: gene Location: 9566-10297 bp Ori: KJV74570.1 Feature: domain Description: RVT_N Location: 9623-9869 bp Feature: domain Description: RVT_N Location: 9623-9869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9917-10289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9917-10289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT_N (pfam13655), RVT-GII

Seq: LAOA01000013.1 Orientia tsutsugamushi str. TA716 ta716.contig.12_1, whole genome shotgun sequence (30933 bp)
Overview 1 RT 1: 25196-28871 bp Neighborhood of RT #1 [25196, 28871] INT_P4_C RVT-GII Arm-DNA-bind_3 Feature: gene Location: 25196-25705 bp Ori: KJV76887.1 Feature: domain Description: INT_P4_C Location: 25199-25532 bp Feature: domain Description: INT_P4_C Location: 25 199-25 5 32 bp Feature: gene Location: 26618-26818 bp Feature: gene Location: 27117-27716 bp Ori: KJV76882.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27120-27549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27120-275 49 bp Feature: gene Location: 28213-28695 bp Ori: KJV76881.1 Feature: domain Description: Arm-DNA-bind_3 Location: 28240-28504 bp Feature: domain Description: Arm-DNA-bind_3 Location: 28240-285 04 bp Feature: gene Location: 28764-28871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-GII, Arm-DNA-bind_3 (pfam13356)

Seq: LAOA01000100.1 Orientia tsutsugamushi str. TA716 ta716.contig.99_1, whole genome shotgun sequence (7195 bp)
Overview 1 RT 1: 745-2930 bp Neighborhood of RT #1 [745, 3124] RVT_N RVT-GII HNHc TraD Feature: gene Location: 745-1878 bp Ori: KJV72678.1 Feature: domain Description: RVT_N Location: 802-1048 bp Feature: domain Description: RVT_N Location: 802-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1096-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1096 -1741 bp Feature: gene Location: 1968-2459 bp Ori: KJV72672.1 Feature: domain Description: HNHc Note: nucleases Location: 2235-2400 bp Feature: domain Description: HNHc Note: nucleases Location: 2235-2400 bp Feature: gene Location: 2669-3124 bp Ori: KJV72674.1 Feature: domain Description: TraD Location: 2753-2930 bp Feature: domain Description: TraD Location: 2753-2930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, HNHc (smart00507), TraD (pfam06412)

Seq: LAOA01000033.1 Orientia tsutsugamushi str. TA716 ta716.contig.32_1, whole genome shotgun sequence (14188 bp)
Overview 1 RT 1: 10920-14100 bp Neighborhood of RT #1 [10920, 14100] TraD HNHc RVT_N RVT-GII GIIM Feature: gene Location: 10920-11375 bp Ori: KJV75808.1 Feature: domain Description: TraD Location: 11004-11181 bp Feature: domain Description: TraD Location: 11004-11181 bp Feature: gene Location: 11585-12076 bp Ori: KJV75799.1 Feature: domain Description: HNHc Note: nucleases Location: 11852-12017 bp Feature: domain Description: HNHc Note: nucleases Location: 11852-12017 bp Feature: gene Location: 12077-13294 bp Ori: KJV75794.1 Feature: domain Description: RVT_N Location: 12134-12380 bp Feature: domain Description: RVT_N Location: 12134-12380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12428-13067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12428-13067 bp Feature: domain Description: GIIM Note: maturase Location: 13139-13289 bp Feature: domain Description: GIIM Note: maturase Location: 13139-13289 bp Feature: gene Location: 13975-14100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LAOA01000125.1 Orientia tsutsugamushi str. TA716 ta716.contig.124_1, whole genome shotgun sequence (6356 bp)
Overview 1 RT 1: 4759-6355 bp Neighborhood of RT #1 [4759, 6356] Toprim_3 RVT-GII Feature: gene Location: 4759-5217 bp Ori: KJV71944.1 Feature: domain Description: Toprim_3 Location: 4762-5008 bp Feature: domain Description: Toprim_3 Location: 4762-5008 bp Feature: gene Location: 5350-5520 bp Feature: gene Location: 5692-6356 bp Ori: KJV71942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977-6355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977-6355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_3 (pfam13362), RVT-GII

Seq: LAOA01000112.1 Orientia tsutsugamushi str. TA716 ta716.contig.111_1, whole genome shotgun sequence (6864 bp)
Overview 1 RT 1: 1-4610 bp Neighborhood of RT #1 [1, 4717] TraD HNHc RVT_N RVT-GII TraA_Ti Feature: gene Location: 1-302 bp Ori: KJV72317.1 Feature: domain Description: TraD Location: 28-205 bp Feature: domain Description: TraD Location: 28-205 bp Feature: gene Location: 566-1057 bp Ori: KJV72318.1 Feature: domain Description: HNHc Note: nucleases Location: 833-998 bp Feature: domain Description: HNHc Note: nucleases Location: 833-9 9 8 bp Feature: gene Location: 1147-2280 bp Ori: KJV72320.1 Feature: domain Description: RVT_N Location: 1204-1450 bp Feature: domain Description: RVT_N Location: 1204-1450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1498-2143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149 8-2143 bp Feature: gene Location: 2471-2641 bp Feature: gene Location: 2960-4717 bp Ori: KJV72314.1 Feature: domain Description: TraA_Ti Location: 2981-4610 bp Feature: domain Description: TraA_Ti Location: 29 81-4610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, TraA_Ti (TIGR02768)

Seq: LAOA01000058.1 Orientia tsutsugamushi str. TA716 ta716.contig.57_1, whole genome shotgun sequence (9849 bp)
Overview 1 RT 1: 7218-9592 bp Neighborhood of RT #1 [7218, 9597] TraD HNHc RVT_N RVT-GII GIIM Feature: gene Location: 7218-7616 bp Ori: KJV74191.1 Feature: domain Description: TraD Location: 7245-7422 bp Feature: domain Description: TraD Location: 7245-7422 bp Feature: gene Location: 7882-8373 bp Ori: KJV74192.1 Feature: domain Description: HNHc Note: nucleases Location: 8149-8314 bp Feature: domain Description: HNHc Note: nucleases Location: 8149-8314 bp Feature: gene Location: 8374-9597 bp Ori: KJV74189.1 Feature: domain Description: RVT_N Location: 8431-8677 bp Feature: domain Description: RVT_N Location: 8431-8677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8725-9370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8725-9370 bp Feature: domain Description: GIIM Note: maturase Location: 9442-9592 bp Feature: domain Description: GIIM Note: maturase Location: 9442-9592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LAOA01000004.1 Orientia tsutsugamushi str. TA716 ta716.contig.3_1, whole genome shotgun sequence (49251 bp)
Overview 1 RT 1: 47108-49243 bp Neighborhood of RT #1 [47108, 49251] RVT_N RVT-GII Feature: gene Location: 47108-47311 bp Feature: gene Location: 47573-47683 bp Feature: gene Location: 48364-49251 bp Ori: KJV77454.1 Feature: domain Description: RVT_N Location: 48421-48667 bp Feature: domain Description: RVT_N Location: 48421-48667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48715-49243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48715-49243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LAOA01000021.1 Orientia tsutsugamushi str. TA716 ta716.contig.20_1, whole genome shotgun sequence (19931 bp)
Overview 1 RT 1: 4943-7775 bp Neighborhood of RT #1 [4943, 7798] TrwB_AAD_bind GIIM GIIM RVT-GII TraD PDDEXK_2 Feature: gene Location: 4943-5386 bp Ori: KJV76443.1 Feature: domain Description: TrwB_AAD_bind Location: 4949-5354 bp Feature: domain Description: TrwB_AAD_bind Location: 4949-5354 bp Feature: gene Location: 5809-6273 bp Ori: KJV76427.1 Feature: domain Description: GIIM Note: maturase Location: 5818-5974 bp Feature: domain Description: GIIM Note: maturase Location: 5818-5974 bp Feature: domain Description: GIIM Note: maturase Location: 6097-6175 bp Feature: domain Description: GIIM Note: maturase Location: 6097-6175 bp Feature: gene Location: 7009-7236 bp Ori: KJV76440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7015-7225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7015-7225 bp Feature: gene Location: 7407-7568 bp Ori: KJV76445.1 Feature: domain Description: TraD Location: 7434-7542 bp Feature: domain Description: TraD Location: 7434-7542 bp Feature: gene Location: 7664-7798 bp Ori: KJV76444.1 Feature: domain Description: PDDEXK_2 Location: 7691-7775 bp Feature: domain Description: PDDEXK_2 Location: 7691-7775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrwB_AAD_bind (pfam10412), GIIM (pfam08388), RVT-GII, TraD (pfam06412), PDDEXK_2 (pfam12784)

Seq: LAOA01000103.1 Orientia tsutsugamushi str. TA716 ta716.contig.102_1, whole genome shotgun sequence (7148 bp)
Overview 1 RT 1: 4905-6496 bp Neighborhood of RT #1 [4905, 6564] group_II_RT_mat RVT-GII GIIM Feature: gene Location: 4905-5057 bp Feature: gene Location: 5242-5517 bp Ori: KJV72575.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 5365-5512 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5365-5512 bp Feature: gene Location: 5779-5949 bp Ori: KJV72574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5782-5926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5782-5926 bp Feature: gene Location: 6071-6250 bp Feature: gene Location: 6307-6564 bp Ori: KJV72576.1 Feature: domain Description: GIIM Note: maturase Location: 6328-6496 bp Feature: domain Description: GIIM Note: maturase Location: 6328-6496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: LAOA01000009.1 Orientia tsutsugamushi str. TA716 ta716.contig.8_1, whole genome shotgun sequence (35131 bp)
Overview 1 RT 1: 8952-18429 bp Neighborhood of RT #1 [8952, 18530] RVT_N RVT_N RVT-GII GIIM GIIM Autotransporter Feature: gene Location: 8952-9281 bp Feature: gene Location: 10860-11054 bp Ori: KJV77086.1 Feature: domain Description: RVT_N Location: 10983-11049 bp Feature: domain Description: RVT_N Location: 10983-11049 bp Feature: gene Location: 11136-11771 bp Ori: KJV77090.1 Feature: domain Description: RVT_N Location: 11139-11217 bp Feature: domain Description: RVT_N Location: 11139-11217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11271-11757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11271-11757 bp Feature: gene Location: 12507-12971 bp Ori: KJV77109.1 Feature: domain Description: GIIM Note: maturase Location: 12516-12672 bp Feature: domain Description: GIIM Note: maturase Location: 12516-12672 bp Feature: domain Description: GIIM Note: maturase Location: 12795-12873 bp Feature: domain Description: GIIM Note: maturase Location: 12795-12873 bp Feature: gene Location: 13809-18530 bp Ori: KJV77089.1 Feature: domain Description: Autotransporter Location: 17730-18429 bp Feature: domain Description: Autotransporter Location: 17730-18429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Autotransporter (smart00869)

Seq: LAOA01000062.1 Orientia tsutsugamushi str. TA716 ta716.contig.61_1, whole genome shotgun sequence (9216 bp)
Overview 1 RT 1: 1-3601 bp Neighborhood of RT #1 [1, 3633] HNHc RVT_N RVT-GII GIIM ANK Feature: gene Location: 1-126 bp Feature: gene Location: 336-827 bp Ori: KJV74034.1 Feature: domain Description: HNHc Note: nucleases Location: 603-768 bp Feature: domain Description: HNHc Note: nucleases Location: 603-768 bp Feature: gene Location: 828-2051 bp Ori: KJV74033.1 Feature: domain Description: RVT_N Location: 885-1131 bp Feature: domain Description: RVT_N Location: 885-1131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1179-1824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1179-1824 bp Feature: domain Description: GIIM Note: maturase Location: 1896-2046 bp Feature: domain Description: GIIM Note: maturase Location: 1896-2046 bp Feature: gene Location: 2682-3194 bp Feature: gene Location: 3475-3633 bp Ori: KJV74031.1 Feature: domain Description: ANK Location: 3484-3601 bp Feature: domain Description: ANK Location: 3484-3601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ANK (smart00248)

Seq: LAOA01000180.1 Orientia tsutsugamushi str. TA716 ta716.contig.179_1, whole genome shotgun sequence (4687 bp)
Overview 1 RT 1: 67-1856 bp Neighborhood of RT #1 [67, 2050] RVT-GII GIIM HNHc TraD Feature: gene Location: 67-894 bp Ori: KJV70526.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73-667 bp Feature: domain Description: GIIM Note: maturase Location: 739-889 bp Feature: domain Description: GIIM Note: maturase Location: 739-889 bp Feature: gene Location: 895-1386 bp Ori: KJV70524.1 Feature: domain Description: HNHc Note: nucleases Location: 1162-1327 bp Feature: domain Description: HNHc Note: nucleases Location: 116 2-1327 bp Feature: gene Location: 1652-2050 bp Ori: KJV70527.1 Feature: domain Description: TraD Location: 1679-1856 bp Feature: domain Description: TraD Location: 16 79-1856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraD (pfam06412)

Seq: LAOA01000115.1 Orientia tsutsugamushi str. TA716 ta716.contig.114_1, whole genome shotgun sequence (6794 bp)
Overview 1 RT 1: 4749-6794 bp Neighborhood of RT #1 [4749, 6794] Arm-DNA-bind_3 RVT-GII Feature: gene Location: 4749-5363 bp Ori: KJV72242.1 Feature: domain Description: Arm-DNA-bind_3 Location: 4782-5058 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4782-5058 bp Feature: gene Location: 5497-5697 bp Feature: gene Location: 5896-6198 bp Ori: KJV72241.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977-6196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977-6196 bp Feature: gene Location: 6350-6794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-GII

Seq: LAOA01000027.1 Orientia tsutsugamushi str. TA716 ta716.contig.26_1, whole genome shotgun sequence (16523 bp)
Overview 1 RT 1: 10088-14793 bp Neighborhood of RT #1 [10088, 14793] MviN RVT-GII Lipase_3 Feature: gene Location: 10088-11602 bp Ori: KJV76187.1 Gene: mviN Feature: domain Description: MviN Location: 10094-11579 bp Feature: domain Description: MviN Location: 10094-11579 bp Feature: gene Location: 11639-12019 bp Feature: gene Location: 12189-12428 bp Ori: KJV76182.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12201-12423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12201-12423 bp Feature: gene Location: 13197-14390 bp Ori: KJV76179.1 Feature: domain Description: Lipase_3 Location: 13521-13692 bp Feature: domain Description: Lipase_3 Location: 13521-13692 bp Feature: gene Location: 14692-14793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviN (COG0728), RVT-GII, Lipase_3 (pfam01764)