myRT

myRT report for GCA_000965065.1_ASM96506v1

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Seq: LAOM01000007.1 Orientia tsutsugamushi str. Sido sido.contig.6_1, whole genome shotgun sequence (14960 bp)
Overview 1 RT 1: 9718-11388 bp Neighborhood of RT #1 [9718, 11393] RVT_N RVT-GII GIIM Feature: gene Location: 9718-9834 bp Feature: gene Location: 9846-10136 bp Feature: gene Location: 10170-11393 bp Ori: KJW05165.1 Feature: domain Description: RVT_N Location: 10227-10473 bp Feature: domain Description: RVT_N Location: 1 0227-1 0473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10521-11166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0521 -1 1 1 66 bp Feature: domain Description: GIIM Note: maturase Location: 11241-11388 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 241 -1 1 388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LAOM01000009.1 Orientia tsutsugamushi str. Sido sido.contig.8_1, whole genome shotgun sequence (14857 bp)
Overview 1 RT 1: 13076-14364 bp Neighborhood of RT #1 [13076, 14369] COG3415 DDE_3 RVT-GII Feature: gene Location: 13076-13450 bp Ori: KJW04815.1 Feature: domain Description: COG3415 Location: 13079-13424 bp Feature: domain Description: COG3415 Location: 13079-1342 4 bp Feature: gene Location: 13437-13943 bp Ori: KJW04812.1 Feature: domain Description: DDE_3 Location: 13491-13908 bp Feature: domain Description: DDE_3 Location: 13491-13908 bp Feature: gene Location: 14214-14369 bp Ori: KJW04809.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14274-14364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 74-14364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DDE_3 (pfam13358), RVT-GII

Seq: LAOM01000028.1 Orientia tsutsugamushi str. Sido sido.contig.27_1, whole genome shotgun sequence (8835 bp)
Overview 1 RT 1: 5216-8785 bp Neighborhood of RT #1 [5216, 8835] rnc RVT-GII DDE_3 HTH_23 Feature: gene Location: 5216-5971 bp Ori: KJW01962.1 Gene: rnc Feature: domain Description: rnc Location: 5285-5945 bp Feature: domain Description: rnc Location: 5285-5945 bp Feature: gene Location: 6799-6924 bp Feature: gene Location: 7552-7707 bp Ori: KJW01965.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7612-7702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7612-7702 bp Feature: gene Location: 7978-8484 bp Ori: KJW01968.1 Feature: domain Description: DDE_3 Location: 8032-8449 bp Feature: domain Description: DDE_3 Location: 803 2-8449 bp Feature: gene Location: 8650-8835 bp Ori: KJW01966.1 Feature: domain Description: HTH_23 Location: 8659-8785 bp Feature: domain Description: HTH_23 Location: 8659-8785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rnc (PRK00102), RVT-GII, DDE_3 (pfam13358), HTH_23 (pfam13384)

Seq: LAOM01000066.1 Orientia tsutsugamushi str. Sido sido.contig.65_1, whole genome shotgun sequence (5635 bp)
Overview 1 RT 1: 1261-4440 bp Neighborhood of RT #1 [1261, 4440] DDE_3 RVT-GII Feature: gene Location: 1261-1767 bp Ori: KJV98476.1 Feature: domain Description: DDE_3 Location: 1315-1732 bp Feature: domain Description: DDE_3 Location: 1315-1732 bp Feature: gene Location: 2353-2628 bp Feature: gene Location: 2664-2858 bp Ori: KJV98470.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2667-2856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2667-2856 bp Feature: gene Location: 3010-4134 bp Feature: gene Location: 4153-4440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII

Seq: LAOM01000019.1 Orientia tsutsugamushi str. Sido sido.contig.18_1, whole genome shotgun sequence (10885 bp)
Overview 1 RT 1: 2660-5767 bp Neighborhood of RT #1 [2660, 5767] COG3547 COG3415 RVT-GII Feature: gene Location: 2660-3622 bp Ori: KJW03847.1 Feature: domain Description: COG3547 Location: 2672-3584 bp Feature: domain Description: COG35 47 Location: 2672-35 84 bp Feature: gene Location: 3682-4044 bp Ori: KJW03846.1 Feature: domain Description: COG3415 Location: 3685-4021 bp Feature: domain Description: COG3415 Location: 3685 -4021 bp Feature: gene Location: 4088-4483 bp Ori: KJW03840.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-4316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-4316 bp Feature: gene Location: 4935-5438 bp Feature: gene Location: 5450-5767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), COG3415 (Transposase ), RVT-GII

Seq: LAOM01000080.1 Orientia tsutsugamushi str. Sido sido.contig.79_1, whole genome shotgun sequence (4024 bp)
Overview 1 RT 1: 1060-3993 bp Neighborhood of RT #1 [1060, 4024] PRK09165 RVT-GII RVT-UNC RVT-GII TraI_TIGR Feature: gene Location: 1060-1647 bp Ori: KJV97262.1 Feature: domain Description: PRK09165 Location: 1069-1627 bp Feature: domain Description: PRK0916 5 Location: 106 9-16 27 bp Feature: gene Location: 1775-1939 bp Feature: gene Location: 2111-2599 bp Ori: KJV97263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2396-2573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2396 -2573 bp Feature: gene Location: 2650-2769 bp Ori: KJV97266.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 2653-2749 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 26 53-2749 bp Feature: gene Location: 2862-3239 bp Ori: KJV97267.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2865-3072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286 5-3072 bp Feature: gene Location: 3615-4024 bp Ori: KJV97265.1 Feature: domain Description: TraI_TIGR Location: 3621-3993 bp Feature: domain Description: TraI_TIGR Location: 36 21-3993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09165 (replicative DNA helicase; Provisional), RVT-GII, RVT-GII/RVT-CRISPR/RVT-UG17/RVT-DGRs(RVT-UNC), TraI_TIGR (TIGR02760)