myRT

myRT report for GCA_000965345.1_ASM96534v1

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Seq: LAGL01001091.1 Clostridium botulinum strain CDC68016NT contig00004, whole genome shotgun sequence (11573 bp)
Overview 1 RT 1: 3194-10486 bp Neighborhood of RT #1 [3194, 10512] WecE AHBA_syn RVT-GII RVT-GII GIIM RutF Feature: gene Location: 3194-4369 bp Feature: domain Description: WecE Location: 3200-4358 bp Feature: domain Description: WecE Location: 3200-4358 bp Feature: gene Location: 4514-5635 bp Feature: domain Description: AHBA_syn Location: 4577-5618 bp Feature: domain Description: AHBA_syn Location: 4577-561 8 bp Feature: gene Location: 7202-7765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7460-7724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7460-7724 bp Feature: gene Location: 7773-8498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7776-8148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7776-81 48 bp Feature: domain Description: GIIM Note: maturase Location: 8208-8433 bp Feature: domain Description: GIIM Note: maturase Location: 8208-8433 bp Feature: gene Location: 9675-9818 bp Feature: gene Location: 10093-10512 bp Feature: domain Description: RutF Location: 10132-10486 bp Feature: domain Description: RutF Location: 1 01 32-1 0486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WecE (COG0399), AHBA_syn (cd00616), RVT-GII, GIIM (pfam08388), RutF (TIGR03615)

Seq: LAGL01000512.1 Clostridium botulinum strain CDC68016NT contig00166, whole genome shotgun sequence (15927 bp)
Overview 1 RT 1: 2376-7481 bp Neighborhood of RT #1 [2376, 7504] RVT-GII YHI9 YHI9 Feature: gene Location: 2376-2546 bp Feature: gene Location: 2821-3204 bp Feature: gene Location: 3279-4385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3600-4299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3600-42 99 bp Feature: gene Location: 5496-6272 bp Feature: domain Description: YHI9 Location: 5499-6255 bp Feature: domain Description: YHI9 Location: 5499-62 55 bp Feature: gene Location: 6563-7504 bp Feature: domain Description: YHI9 Location: 6587-7481 bp Feature: domain Description: YHI9 Location: 6587-7481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YHI9 (COG0384)

Seq: LAGL01000312.1 Clostridium botulinum strain CDC68016NT contig01145, whole genome shotgun sequence (2501 bp)
Overview 1 RT 1: 253-2270 bp Neighborhood of RT #1 [253, 2416] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 253-393 bp Feature: gene Location: 590-2416 bp Feature: domain Description: RVT_N Location: 647-887 bp Feature: domain Description: RVT_N Location: 647-887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1601 bp Feature: domain Description: GIIM Note: maturase Location: 1664-1898 bp Feature: domain Description: GIIM Note: maturase Location: 1664-1898 bp Feature: domain Description: HNHc Note: nucleases Location: 2105-2270 bp Feature: domain Description: HNHc Note: nucleases Location: 2105-2270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LAGL01001130.1 Clostridium botulinum strain CDC68016NT contig01278, whole genome shotgun sequence (26296 bp)
Overview 1 RT 1: 7806-11123 bp Neighborhood of RT #1 [7806, 11161] COG1568 RVT-CRISPR-like Mor PRK14453 Feature: gene Location: 7806-8072 bp Feature: gene Location: 8216-8998 bp Feature: domain Description: COG1568 Location: 8264-8984 bp Feature: domain Description: COG1568 Location: 8264 -8984 bp Feature: gene Location: 9367-9504 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9373-9496 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9373-94 96 bp Feature: gene Location: 9729-9989 bp Feature: domain Description: Mor Location: 9762-9963 bp Feature: domain Description: Mor Location: 9762-9963 bp Feature: gene Location: 10739-11161 bp Feature: domain Description: PRK14453 Location: 10742-11123 bp Feature: domain Description: PRK14 4 53 Location: 1074 2-11123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1568 (Predicted methyltransferase ), RVT-CRISPR, Mor (pfam08765), PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional)

Seq: LAGL01000522.1 Clostridium botulinum strain CDC68016NT contig01662, whole genome shotgun sequence (602 bp)
Overview 1 RT 1: 3-588 bp Neighborhood of RT #1 [3, 599] RVT-UG5 Feature: gene Location: 3-599 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 144-588 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 144-5 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5