myRT

myRT report for GCA_000965465.1_ASM96546v1

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Seq: LAGK01000451.1 Clostridium botulinum strain CDC68016 contig00013, whole genome shotgun sequence (2502 bp)
Overview 1 RT 1: 253-2271 bp Neighborhood of RT #1 [253, 2417] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 253-393 bp Feature: gene Location: 591-2417 bp Feature: domain Description: RVT_N Location: 648-888 bp Feature: domain Description: RVT_N Location: 648-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1 602 bp Feature: domain Description: GIIM Note: maturase Location: 1665-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1 665-1 899 bp Feature: domain Description: HNHc Note: nucleases Location: 2106-2271 bp Feature: domain Description: HNHc Note: nucleases Location: 21 06-2271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LAGK01000727.1 Clostridium botulinum strain CDC68016 contig00301, whole genome shotgun sequence (11590 bp)
Overview 1 RT 1: 5245-9533 bp Neighborhood of RT #1 [5245, 9562] AHBA_syn WecE RVT-GII RVT-GII XRE YbhL Feature: gene Location: 5245-5406 bp Feature: domain Description: AHBA_syn Location: 5248-5392 bp Feature: domain Description: AHBA_syn Location: 52 48-5392 bp Feature: gene Location: 5495-5653 bp Feature: domain Description: WecE Location: 5501-5645 bp Feature: domain Description: WecE Location: 5501-5645 bp Feature: gene Location: 7225-7782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7480-7744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7480-7744 bp Feature: gene Location: 7885-8466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7927-8164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792 7-8164 bp Feature: gene Location: 8874-9074 bp Feature: domain Description: XRE Location: 8877-9066 bp Feature: domain Description: XRE Location: 8877-9066 bp Feature: gene Location: 9071-9562 bp Feature: domain Description: YbhL Location: 9083-9533 bp Feature: domain Description: YbhL Location: 9083-9533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AHBA_syn (cd00616), WecE (COG0399), RVT-GII, XRE (COG1476), YbhL (COG0670)

Seq: LAGK01000368.1 Clostridium botulinum strain CDC68016 contig00311, whole genome shotgun sequence (33452 bp)
Overview 1 RT 1: 2423-7323 bp Neighborhood of RT #1 [2423, 7547] HNHc RVT-GII YHI9 YHI9 Feature: gene Location: 2423-2593 bp Feature: gene Location: 2611-3252 bp Feature: domain Description: HNHc Note: nucleases Location: 2977-3142 bp Feature: domain Description: HNHc Note: nucleases Location: 2977-3 142 bp Feature: gene Location: 3421-4431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3742-4420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 742-4420 bp Feature: gene Location: 5540-6316 bp Feature: domain Description: YHI9 Location: 5543-6299 bp Feature: domain Description: YHI9 Location: 5543 -6299 bp Feature: gene Location: 6753-7547 bp Feature: domain Description: YHI9 Location: 6777-7323 bp Feature: domain Description: YHI9 Location: 6777-73 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, YHI9 (COG0384)

Seq: LAGK01000310.1 Clostridium botulinum strain CDC68016 contig00522, whole genome shotgun sequence (990 bp)
Overview 1 RT 1: 33-944 bp Neighborhood of RT #1 [33, 944] RVT-UG5 Feature: gene Location: 33-344 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 39-189 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 39-189 bp Feature: gene Location: 735-944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: LAGK01000474.1 Clostridium botulinum strain CDC68016 contig00637, whole genome shotgun sequence (29080 bp)
Overview 1 RT 1: 10564-14092 bp Neighborhood of RT #1 [10564, 14130] COG1568 RVT-CRISPR-like PRK14453 Feature: gene Location: 10564-10830 bp Feature: gene Location: 10974-11756 bp Feature: domain Description: COG1568 Location: 11022-11742 bp Feature: domain Description: COG15 68 Location: 11022-11742 bp Feature: gene Location: 12124-12261 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12130-12253 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12130-1225 3 bp Feature: gene Location: 12555-12752 bp Feature: gene Location: 13501-14130 bp Feature: domain Description: PRK14453 Location: 13504-14092 bp Feature: domain Description: PRK1445 3 Location: 135 04-14092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1568 (Predicted methyltransferase ), RVT-CRISPR, PRK14453 (chloramphenicol/florfenicol resistance protein; Provisional)