myRT

myRT report for GCA_000966285.1_ASM96628v1

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Seq: KQ031391.1 Frankia sp. DC12 genomic scaffold FraDC12DRAFT_scaffold1.1, whole genome shotgun sequence (6884336 bp)
Overview 1 RT 1: 127527-134718 bp 2 RT 2: 1326544-1329513 bp 3 RT 3: 2727701-2735713 bp 4 RT 4: 3566086-3574713 bp 5 RT 5: 4321339-4324555 bp 6 RT 6: 4484883-4491520 bp 7 RT 7: 6267172-6272800 bp 8 RT 8: 6566490-6573070 bp Neighborhood of RT #1 [127527, 134738] THN_reductase-like_SDR_c DDE_5 RVT-GII GIIM HyuA Acetone_carb_G Neighborhood of RT #2 [1326544, 1329513] PTPS NrdG RVT-CRISPR-like YfmG Neighborhood of RT #3 [2727701, 2735713] NodN RVT-GII GIIM PRK05367 Neighborhood of RT #4 [3566086, 3574713] FGGY_D-XK_1 PRK12677 RVT-GII GIIM INT_tnpB_C_Tn554 Neighborhood of RT #5 [4321339, 4324555] rplL group_II_RT_mat RVT-GII Neighborhood of RT #6 [4484883, 4491520] mycofact_TetR MFS_Azr1_MDR_like RVT-GII GIIM Neighborhood of RT #7 [6267172, 6272865] PcbC RVT-GII GIIM F420H2_quin_red F420_Rv3520c Neighborhood of RT #8 [6566490, 6573078] HTH_XRE BenE RVT-GII GIIM AcrR PRK08186 Feature: gene Location: 127527-128084 bp Feature: domain Description: THN_reductase-like_SDR_c Location: 127539-127908 bp Feature: domain Description: THN_reductase-like_SDR_c Location: 1 27539-1 27908 bp Feature: gene Location: 128240-129094 bp Feature: domain Description: DDE_5 Location: 128249-128519 bp Feature: domain Description: DDE_5 Location: 1 28249-1 2851 9 bp Feature: gene Location: 129670-130977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129913-130579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2991 3-1 30579 bp Feature: domain Description: GIIM Note: maturase Location: 130660-130879 bp Feature: domain Description: GIIM Note: maturase Location: 1 30660-1 30879 bp Feature: gene Location: 132454-134382 bp Feature: domain Description: HyuA Location: 132463-134371 bp Feature: domain Description: HyuA Location: 1 32463-1 34371 bp Feature: gene Location: 134379-134738 bp Feature: domain Description: Acetone_carb_G Location: 134406-134718 bp Feature: domain Description: Acetone_carb_G Location: 1 34406-1 3471 8 bp Feature: gene Location: 1326544-1326924 bp Feature: domain Description: PTPS Location: 1326556-1326913 bp Feature: domain Description: PTPS Location: 1 326556-1 32691 3 bp Feature: gene Location: 1326921-1327616 bp Feature: domain Description: NrdG Location: 1326939-1327599 bp Feature: domain Description: NrdG Location: 1 326939-1 327599 bp Feature: gene Location: 1327777-1328559 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1327984-1328527 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 327984-1 328527 bp Feature: gene Location: 1328576-1329124 bp Feature: domain Description: YfmG Location: 1328711-1329119 bp Feature: domain Description: YfmG Location: 1 32871 1 -1 3291 1 9 bp Feature: gene Location: 1329373-1329513 bp Feature: gene Location: 2727701-2728156 bp Feature: domain Description: NodN Location: 2727725-2728151 bp Feature: domain Description: NodN Location: 2727725-27281 51 bp Feature: gene Location: 2728573-2728875 bp Feature: gene Location: 2728992-2730299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2729235-2729901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2729235-2729901 bp Feature: domain Description: GIIM Note: maturase Location: 2729982-2730201 bp Feature: domain Description: GIIM Note: maturase Location: 2729982-2730201 bp Feature: gene Location: 2730958-2734011 bp Feature: domain Description: PRK05367 Location: 2731012-2733934 bp Feature: domain Description: PRK05367 Location: 2731 01 2-2733934 bp Feature: gene Location: 2734808-2735713 bp Feature: gene Location: 3566086-3567528 bp Feature: domain Description: FGGY_D-XK_1 Location: 3566095-3567409 bp Feature: domain Description: FGGY_D-XK_1 Location: 3566095-3567409 bp Feature: gene Location: 3567869-3569089 bp Feature: domain Description: PRK12677 Location: 3567935-3569081 bp Feature: domain Description: PRK1 2677 Location: 3567935-3569081 bp Feature: gene Location: 3569821-3571128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3570064-3570730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3570064-3570730 bp Feature: domain Description: GIIM Note: maturase Location: 3570811-3571030 bp Feature: domain Description: GIIM Note: maturase Location: 357081 1 -3571 030 bp Feature: gene Location: 3572247-3574247 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 3573183-3573423 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 35731 83-3573423 bp Feature: gene Location: 3574252-3574713 bp Feature: gene Location: 4321339-4321728 bp Feature: domain Description: rplL Location: 4321348-4321726 bp Feature: domain Description: rplL Location: 4321 348-4321 726 bp Feature: gene Location: 4322461-4322622 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4322470-4322590 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4322470-4322590 bp Feature: gene Location: 4322541-4323185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4322625-4323123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4322625-43231 23 bp Feature: gene Location: 4323269-4323616 bp Feature: gene Location: 4324334-4324555 bp Feature: gene Location: 4484883-4485539 bp Feature: domain Description: mycofact_TetR Location: 4484949-4485513 bp Feature: domain Description: mycofact_TetR Location: 4484949-448551 3 bp Feature: gene Location: 4485739-4487433 bp Feature: domain Description: MFS_Azr1_MDR_like Location: 4485874-4487284 bp Feature: domain Description: MFS_Azr1 _MDR_like Location: 4485874-4487284 bp Feature: gene Location: 4488187-4489494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4488430-4489096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4488430-4489096 bp Feature: domain Description: GIIM Note: maturase Location: 4489177-4489396 bp Feature: domain Description: GIIM Note: maturase Location: 44891 77-4489396 bp Feature: gene Location: 4489596-4489754 bp Feature: gene Location: 4489763-4491520 bp Feature: gene Location: 6267172-6267630 bp Feature: gene Location: 6267676-6268734 bp Feature: domain Description: PcbC Location: 6267763-6268648 bp Feature: domain Description: PcbC Location: 6267763-6268648 bp Feature: gene Location: 6269446-6270753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6269689-6270355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6269689-6270355 bp Feature: domain Description: GIIM Note: maturase Location: 6270436-6270655 bp Feature: domain Description: GIIM Note: maturase Location: 6270436-6270655 bp Feature: gene Location: 6271103-6271552 bp Feature: domain Description: F420H2_quin_red Location: 6271139-6271538 bp Feature: domain Description: F420H2_quin_red Location: 6271 1 39-6271 538 bp Feature: gene Location: 6271792-6272865 bp Feature: domain Description: F420_Rv3520c Location: 6271831-6272800 bp Feature: domain Description: F420_Rv3520c Location: 6271 831 -6272800 bp Feature: gene Location: 6566490-6567620 bp Feature: domain Description: HTH_XRE Location: 6567114-6567282 bp Feature: domain Description: HTH_XRE Location: 65671 1 4-6567282 bp Feature: gene Location: 6567082-6568365 bp Feature: domain Description: BenE Location: 6567103-6568228 bp Feature: domain Description: BenE Location: 65671 03-6568228 bp Feature: gene Location: 6569244-6570551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6569487-6570153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6569487-65701 53 bp Feature: domain Description: GIIM Note: maturase Location: 6570234-6570453 bp Feature: domain Description: GIIM Note: maturase Location: 6570234-6570453 bp Feature: gene Location: 6570707-6571396 bp Feature: domain Description: AcrR Location: 6570770-6571310 bp Feature: domain Description: AcrR Location: 6570770-6571 31 0 bp Feature: gene Location: 6571414-6573078 bp Feature: domain Description: PRK08186 Location: 6571420-6573070 bp Feature: domain Description: PRK081 86 Location: 6571 420-6573070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT THN_reductase-like_SDR_c (cd05362), DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), HyuA (COG0145), Acetone_carb_G (pfam08882), PTPS (pfam01242), NrdG (TIGR02491), RVT-CRISPR, YfmG (COG1262)
NodN (cd03450), PRK05367 (aminomethyl-transferring glycine dehydrogenase), FGGY_D-XK_1 (cd07809), PRK12677 (xylose isomerase; Provisional), INT_tnpB_C_Tn554 (cd01187), rplL (PRK00157), group_II_RT_mat (TIGR04416), mycofact_TetR (TIGR03968), MFS_Azr1_MDR_like (cd17502), PcbC (COG3491)
F420H2_quin_red (pfam04075), F420_Rv3520c (TIGR03559), HTH_XRE (smart00530), BenE (pfam03594), AcrR (COG1309), PRK08186 (allophanate hydrolase; Provisional)