myRT

myRT report for GCA_000969665.1_ASM96966v1

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Seq: JWJY01000167.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000167, whole genome shotgun sequence (2773 bp)
Overview 1 RT 1: 235-2035 bp Neighborhood of RT #1 [235, 2109] RVT-GII GIIM HNHc Feature: gene Location: 235-2109 bp Ori: KKB27217.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535-1 240 bp Feature: domain Description: GIIM Note: maturase Location: 1354-1522 bp Feature: domain Description: GIIM Note: maturase Location: 1 354-1 522 bp Feature: domain Description: HNHc Note: nucleases Location: 1870-2035 bp Feature: domain Description: HNHc Note: nucleases Location: 1 870-2035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JWJY01000130.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000130, whole genome shotgun sequence (5299 bp)
Overview 1 RT 1: 613-5068 bp Neighborhood of RT #1 [613, 5193] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc Feature: gene Location: 613-2436 bp Ori: KKB27360.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1711 bp Feature: domain Description: Intron_maturas2 Location: 1783-2101 bp Feature: domain Description: Intron_maturas2 Location: 1783-2 101 bp Feature: domain Description: HNHc Note: nucleases Location: 2254-2407 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 54-2 407 bp Feature: gene Location: 3403-5193 bp Ori: KKB27361.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4396 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Feature: domain Description: HNHc Note: nucleases Location: 4936-5068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JWJY01000174.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000174, whole genome shotgun sequence (2608 bp)
Overview 1 RT 1: 704-2393 bp Neighborhood of RT #1 [704, 2509] RVT-GII HNHc Feature: gene Location: 704-2509 bp Ori: KKB27208.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1694 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-2393 bp Feature: domain Description: HNHc Note: nucleases Location: 2255-23 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JWJY01000091.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000091, whole genome shotgun sequence (14073 bp)
Overview 1 RT 1: 4745-14060 bp Neighborhood of RT #1 [4745, 14060] RapH_N TPR TPR AE_Prim_S_like RVT-UG10 Feature: gene Location: 4745-4876 bp Feature: gene Location: 4873-5964 bp Ori: KKB27725.1 Gene: rapA_3 Feature: domain Description: RapH_N Location: 4894-5065 bp Feature: domain Description: RapH_N Location: 4 894 -5065 bp Feature: domain Description: TPR Location: 5200-5467 bp Feature: domain Description: TPR Location: 5200-54 67 bp Feature: domain Description: TPR Location: 5512-5923 bp Feature: domain Description: TPR Location: 5512-5923 bp Feature: gene Location: 6930-12569 bp Ori: KKB27726.1 Feature: domain Description: AE_Prim_S_like Location: 7140-7359 bp Feature: domain Description: AE_Prim_S_like Location: 714 0-7359 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 8346-9000 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 834 6-9000 bp Feature: gene Location: 13008-13433 bp Feature: gene Location: 13443-14060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RapH_N (pfam18801), TPR (smart00028), AE_Prim_S_like (cl01287), RVT-UG10

Seq: JWJY01000183.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000183, whole genome shotgun sequence (2329 bp)
Overview 1 RT 1: 390-2190 bp Neighborhood of RT #1 [390, 2213] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 390-2213 bp Ori: KKB27188.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 4-1488 bp Feature: domain Description: Intron_maturas2 Location: 1557-1896 bp Feature: domain Description: Intron_maturas2 Location: 15 5 7-1896 bp Feature: domain Description: HNHc Note: nucleases Location: 2034-2190 bp Feature: domain Description: HNHc Note: nucleases Location: 2034-2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JWJY01000155.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000155, whole genome shotgun sequence (3453 bp)
Overview 1 RT 1: 1084-3132 bp Neighborhood of RT #1 [1084, 3140] RVT-GII HNHc CwlT_like Feature: gene Location: 1084-2880 bp Ori: KKB27256.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1342-2047 bp Feature: domain Description: HNHc Note: nucleases Location: 2608-2743 bp Feature: domain Description: HNHc Note: nucleases Location: 26 08-2743 bp Feature: gene Location: 2949-3140 bp Ori: KKB27257.1 Feature: domain Description: CwlT_like Location: 2976-3132 bp Feature: domain Description: CwlT_like Location: 2976 -3132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), CwlT_like

Seq: JWJY01000034.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000034, whole genome shotgun sequence (53546 bp)
Overview 1 RT 1: 22075-29304 bp Neighborhood of RT #1 [22075, 29304] KOG1000 KOG1000 RVT-GII GIIM Feature: gene Location: 22075-22788 bp Feature: gene Location: 22805-25210 bp Ori: KKB29205.1 Feature: domain Description: KOG1000 Location: 23516-23732 bp Feature: domain Description: KOG1000 Location: 23516-237 32 bp Feature: domain Description: KOG1000 Location: 24335-24668 bp Feature: domain Description: KOG1000 Location: 24335-24668 bp Feature: gene Location: 25485-27350 bp Ori: KKB29206.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25785-26490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257 85-26490 bp Feature: domain Description: GIIM Note: maturase Location: 26577-26760 bp Feature: domain Description: GIIM Note: maturase Location: 2657 7 -267 60 bp Feature: gene Location: 28097-29005 bp Feature: gene Location: 29077-29304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, GIIM (pfam08388)

Seq: JWJY01000081.1 Bacillus thuringiensis serovar mexicanensis strain 27 Btm27_contig000081, whole genome shotgun sequence (15831 bp)
Overview 1 RT 1: 4604-10355 bp Neighborhood of RT #1 [4604, 10384] RVT-GII HNHc LPD1 DUF3854 Feature: gene Location: 4604-5695 bp Feature: gene Location: 6130-6384 bp Feature: gene Location: 6416-8212 bp Ori: KKB27864.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6710-7406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6710-7406 bp Feature: domain Description: HNHc Note: nucleases Location: 8006-8081 bp Feature: domain Description: HNHc Note: nucleases Location: 8 006-8 08 1 bp Feature: gene Location: 8284-9081 bp Ori: KKB27865.1 Feature: domain Description: LPD1 Location: 8830-9025 bp Feature: domain Description: LPD1 Location: 8 8 30-9025 bp Feature: gene Location: 9071-10384 bp Ori: KKB27866.1 Feature: domain Description: DUF3854 Location: 10016-10355 bp Feature: domain Description: DUF38 54 Location: 10016-10355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), LPD1 (pfam18796), DUF3854 (pfam12965)