myRT

myRT report for GCA_000970875.1_ASM97087v1

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Seq: LASX01000107.1 Mycobacterium nebraskense strain AKUC1 PROKKA_contig000107, whole genome shotgun sequence (17334 bp)
Overview 1 RT 1: 182-7664 bp Neighborhood of RT #1 [182, 7675] RVT-GII GIIM TetR_N TetR_C_35 CypX Feature: gene Location: 182-1528 bp Feature: gene Location: 3501-4949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3819-4506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 9-4506 bp Feature: domain Description: GIIM Note: maturase Location: 4581-4776 bp Feature: domain Description: GIIM Note: maturase Location: 4581 -4776 bp Feature: gene Location: 5696-6286 bp Feature: domain Description: TetR_N Location: 5714-5846 bp Feature: domain Description: TetR_N Location: 571 4-5846 bp Feature: domain Description: TetR_C_35 Location: 5915-6248 bp Feature: domain Description: TetR_C_35 Location: 591 5-6248 bp Feature: gene Location: 6374-7675 bp Feature: domain Description: CypX Location: 6449-7664 bp Feature: domain Description: CypX Location: 6449-7664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TetR_N (pfam00440), TetR_C_35 (pfam18556), CypX (COG2124)

Seq: LASX01000348.1 Mycobacterium nebraskense strain AKUC1 PROKKA_contig000348, whole genome shotgun sequence (5678 bp)
Overview 1 RT 1: 811-5142 bp Neighborhood of RT #1 [811, 5142] RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 811-2598 bp Feature: RT Description: RVT_N Location: 841-1078 bp Feature: RT Description: RVT_N Location: 841-1078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1138-1798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1138-1798 bp Feature: domain Description: GIIM Note: maturase Location: 1867-2098 bp Feature: domain Description: GIIM Note: maturase Location: 1867-2 098 bp Feature: gene Location: 3311-4549 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3323-3794 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 332 3-3794 bp Feature: domain Description: Transposase_20 Location: 4136-4388 bp Feature: domain Description: Transposase_2 0 Location: 4136-4388 bp Feature: gene Location: 4963-5142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LASX01000038.1 Mycobacterium nebraskense strain AKUC1 PROKKA_contig000038, whole genome shotgun sequence (27450 bp)
Overview 1 RT 1: 10374-16766 bp Neighborhood of RT #1 [10374, 16786] RVT-GII GIIM LZ_Tnp_IS481 Tra5 DUF1490 Feature: gene Location: 10374-11087 bp Feature: gene Location: 11111-11419 bp Feature: gene Location: 11954-13426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12296-12992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12296-12992 bp Feature: domain Description: GIIM Note: maturase Location: 13061-13280 bp Feature: domain Description: GIIM Note: maturase Location: 13 061-13 280 bp Feature: gene Location: 14033-15859 bp Feature: domain Description: LZ_Tnp_IS481 Location: 14099-14273 bp Feature: domain Description: LZ_Tnp_IS481 Location: 14099-14273 bp Feature: domain Description: Tra5 Location: 14276-14936 bp Feature: domain Description: Tra5 Location: 14276-1493 6 bp Feature: gene Location: 16505-16786 bp Feature: domain Description: DUF1490 Location: 16508-16766 bp Feature: domain Description: DUF1490 Location: 16508-16766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LZ_Tnp_IS481 (pfam13011), Tra5 (COG2801), DUF1490 (pfam07371)