myRT

myRT report for GCA_000972265.1_ASM97226v1

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Seq: LAUM01000014.1 Vibrio sp. ECSMB14106 contig14, whole genome shotgun sequence (165294 bp)
Overview 1 RT 1: 19802-28166 bp Neighborhood of RT #1 [19802, 28180] pheT AAA_15 RVT-Retrons DUF3360 Feature: gene Location: 19802-22225 bp Feature: domain Description: pheT Location: 19805-22223 bp Feature: domain Description: pheT Location: 1 9805-22223 bp Feature: gene Location: 22517-24754 bp Feature: domain Description: AAA_15 Location: 22520-23513 bp Feature: domain Description: AAA_1 5 Location: 22520-2351 3 bp Feature: gene Location: 24891-26066 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25050-25683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25050-25683 bp Feature: gene Location: 26183-26422 bp Feature: gene Location: 26657-28180 bp Feature: domain Description: DUF3360 Location: 26720-28166 bp Feature: domain Description: DUF3360 Location: 26720-281 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pheT (PRK09616), AAA_15 (pfam13175), RVT-Retrons, DUF3360 (pfam11840)

Seq: LAUM01000015.1 Vibrio sp. ECSMB14106 contig15, whole genome shotgun sequence (107504 bp)
Overview 1 RT 1: 49147-52848 bp Neighborhood of RT #1 [49147, 52848] RVT-Retrons COG3293 COG3293 Feature: gene Location: 49147-49362 bp Feature: gene Location: 49381-50385 bp Feature: gene Location: 50378-51319 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50486-51077 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50486-51077 bp Feature: gene Location: 51870-52631 bp Feature: domain Description: COG3293 Location: 51888-52194 bp Feature: domain Description: COG32 93 Location: 51888-52 194 bp Feature: domain Description: COG3293 Location: 52236-52617 bp Feature: domain Description: COG32 93 Location: 52 2 36-52 617 bp Feature: gene Location: 52711-52848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3293 (Transposase )

Seq: LAUM01000027.1 Vibrio sp. ECSMB14106 contig27, whole genome shotgun sequence (84412 bp)
Overview 1 RT 1: 4677-11325 bp Neighborhood of RT #1 [4677, 11720] HTH_17 COG5545 RVT_N RVT-GII GIIM NACHT Pentapeptide_4 RelA_SpoT Feature: gene Location: 4677-4919 bp Feature: domain Description: HTH_17 Location: 4710-4875 bp Feature: domain Description: HTH_17 Location: 4710-4875 bp Feature: gene Location: 4912-6153 bp Feature: domain Description: COG5545 Location: 5164-5959 bp Feature: domain Description: COG5545 Location: 5164-5959 bp Feature: gene Location: 6878-8350 bp Feature: RT Description: RVT_N Location: 6926-7169 bp Feature: RT Description: RVT_N Location: 6926-7169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7214-7841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7214-7841 bp Feature: domain Description: GIIM Note: maturase Location: 7901-8126 bp Feature: domain Description: GIIM Note: maturase Location: 7901-8126 bp Feature: gene Location: 8698-10854 bp Feature: domain Description: NACHT Location: 9172-9547 bp Feature: domain Description: NACHT Location: 9172-9547 bp Feature: domain Description: Pentapeptide_4 Location: 10324-10510 bp Feature: domain Description: Pentapeptide_4 Location: 103 24-10510 bp Feature: gene Location: 10854-11720 bp Feature: domain Description: RelA_SpoT Location: 10950-11325 bp Feature: domain Description: RelA_SpoT Location: 10950-113 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelA_SpoT (smart00954), HTH_17 (pfam12728), COG5545 (Predicted P-loop ATPase and inactivated derivatives ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NACHT (pfam05729), Pentapeptide_4 (pfam13599)

Seq: LAUM01000045.1 Vibrio sp. ECSMB14106 contig45, whole genome shotgun sequence (35556 bp)
Overview 1 RT 1: 11035-17777 bp Neighborhood of RT #1 [11035, 17803] PRK05718 RVT_N RVT-GII GIIM PRK09277 COG3205 COG3205 Feature: gene Location: 11035-11664 bp Feature: domain Description: PRK05718 Location: 11041-11659 bp Feature: domain Description: PRK05718 Location: 1104 1-11659 bp Feature: gene Location: 12206-12349 bp Feature: gene Location: 12575-14047 bp Feature: RT Description: RVT_N Location: 12623-12866 bp Feature: RT Description: RVT_N Location: 12623-12866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12911-13538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12911-13538 bp Feature: domain Description: GIIM Note: maturase Location: 13598-13823 bp Feature: domain Description: GIIM Note: maturase Location: 13598-13823 bp Feature: gene Location: 14377-17133 bp Feature: domain Description: PRK09277 Location: 14401-17122 bp Feature: domain Description: PRK09277 Location: 14 4 01-17122 bp Feature: gene Location: 17405-17803 bp Feature: domain Description: COG3205 Location: 17408-17579 bp Feature: domain Description: COG3205 Location: 174 08-17579 bp Feature: domain Description: COG3205 Location: 17603-17777 bp Feature: domain Description: COG3205 Location: 17603-17777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05718 (keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK09277 (aconitate hydratase AcnA), COG3205 (Uncharacterized membrane protein )

Seq: LAUM01000053.1 Vibrio sp. ECSMB14106 contig53, whole genome shotgun sequence (13817 bp)
Overview 1 RT 1: 112-3377 bp Neighborhood of RT #1 [112, 3409] RVT_N RVT-GII GIIM DDE_Tnp_Tn3 FdhD-NarQ Feature: gene Location: 112-1584 bp Feature: RT Description: RVT_N Location: 160-403 bp Feature: RT Description: RVT_N Location: 160-403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1075 bp Feature: domain Description: GIIM Note: maturase Location: 1135-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1135 -1360 bp Feature: gene Location: 2208-2423 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2211-2358 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2211-235 8 bp Feature: gene Location: 2573-3409 bp Feature: domain Description: FdhD-NarQ Location: 2684-3377 bp Feature: domain Description: FdhD-NarQ Location: 2684-3377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), FdhD-NarQ (pfam02634)