myRT

myRT report for GCA_000972705.2_ASM97270v2

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Seq: LATL02000224.1 Limnoraphis robusta CS-951 contig224, whole genome shotgun sequence (23470 bp)
Overview 1 RT 1: 19231-23470 bp Neighborhood of RT #1 [19231, 23470] Pentapeptide Pentapeptide Pentapeptide OmpR RVT_N RVT-GII GIIM HNHc Feature: gene Location: 19231-19752 bp Ori: KMW70251.1 Feature: domain Description: Pentapeptide Location: 19315-19417 bp Feature: domain Description: Pentapeptide Location: 1 931 5-1 941 7 bp Feature: domain Description: Pentapeptide Location: 19453-19567 bp Feature: domain Description: Pentapeptide Location: 1 9453-1 9567 bp Feature: domain Description: Pentapeptide Location: 19570-19681 bp Feature: domain Description: Pentapeptide Location: 1 9570-1 9681 bp Feature: gene Location: 19962-20636 bp Ori: KMW70252.1 Feature: domain Description: OmpR Location: 19965-20631 bp Feature: domain Description: OmpR Location: 1 9965-20631 bp Feature: gene Location: 21049-22830 bp Ori: KMW70257.1 Feature: domain Description: RVT_N Location: 21079-21325 bp Feature: domain Description: RVT_N Location: 21 079-21 325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21367-22042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 367-22042 bp Feature: domain Description: GIIM Note: maturase Location: 22171-22399 bp Feature: domain Description: GIIM Note: maturase Location: 221 71 -22399 bp Feature: domain Description: HNHc Note: nucleases Location: 22561-22735 bp Feature: domain Description: HNHc Note: nucleases Location: 22561 -22735 bp Feature: gene Location: 23229-23470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), OmpR (COG0745), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LATL02000337.1 Limnoraphis robusta CS-951 contig337, whole genome shotgun sequence (65089 bp)
Overview 1 RT 1: 2838-7248 bp Neighborhood of RT #1 [2838, 7364] SLH OprB PhoX RVT_N RVT-GII YkfC McrA Feature: gene Location: 2838-4769 bp Ori: KKD35181.1 Feature: domain Description: SLH Location: 3312-3438 bp Feature: domain Description: SLH Location: 3312 -3438 bp Feature: domain Description: OprB Location: 3510-4767 bp Feature: domain Description: OprB Location: 3510-4767 bp Feature: gene Location: 4950-5540 bp Ori: KKD35182.1 Feature: domain Description: PhoX Location: 4956-5535 bp Feature: domain Description: PhoX Location: 4956-5535 bp Feature: gene Location: 5550-7364 bp Ori: KMW69927.1 Feature: domain Description: RVT_N Location: 5592-5838 bp Feature: domain Description: RVT_N Location: 5592 -5838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5880-6576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5880-6576 bp Feature: domain Description: YkfC Location: 6735-6933 bp Feature: domain Description: YkfC Location: 6735-6933 bp Feature: domain Description: McrA Location: 6978-7248 bp Feature: domain Description: McrA Location: 6978-72 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLH (pfam00395), OprB (pfam04966), PhoX (COG3211), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), McrA (COG4058)

Seq: LATL02000167.1 Limnoraphis robusta CS-951 contig167, whole genome shotgun sequence (28399 bp)
Overview 1 RT 1: 11352-19475 bp Neighborhood of RT #1 [11352, 19475] CyoB CyoC RVT_N RVT-GII GIIM HNHc InsQ Feature: gene Location: 11352-13079 bp Ori: KKD38060.1 Feature: domain Description: CyoB Location: 11427-12993 bp Feature: domain Description: CyoB Location: 11427-12993 bp Feature: gene Location: 13258-13884 bp Ori: KKD38061.1 Feature: domain Description: CyoC Location: 13306-13882 bp Feature: domain Description: CyoC Location: 13 3 06-13 882 bp Feature: gene Location: 14863-16605 bp Ori: KKD38062.1 Feature: domain Description: RVT_N Location: 14899-15145 bp Feature: domain Description: RVT_N Location: 14899-15145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15187-15859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15187-15859 bp Feature: domain Description: GIIM Note: maturase Location: 15964-16195 bp Feature: domain Description: GIIM Note: maturase Location: 15964-16195 bp Feature: domain Description: HNHc Note: nucleases Location: 16387-16540 bp Feature: domain Description: HNHc Note: nucleases Location: 163 87-16540 bp Feature: gene Location: 16688-17965 bp Ori: KKD38063.1 Feature: domain Description: InsQ Location: 16697-17780 bp Feature: domain Description: InsQ Location: 16697-17780 bp Feature: gene Location: 18276-19475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CyoB (TIGR02843), CyoC (TIGR02842), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675)

Seq: LATL02000141.1 Limnoraphis robusta CS-951 contig141, whole genome shotgun sequence (38026 bp)
Overview 1 RT 1: 8813-16460 bp Neighborhood of RT #1 [8813, 16603] RVT_N RVT-GII YkfC McrA RVT_N RVT-GII GIIM HNHc HTH_XRE Feature: gene Location: 8813-9796 bp Feature: gene Location: 9838-10218 bp Feature: gene Location: 10630-12444 bp Ori: KKD37450.1 Feature: domain Description: RVT_N Location: 10672-10918 bp Feature: domain Description: RVT_N Location: 10672-10918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10960-11656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10960-11656 bp Feature: domain Description: YkfC Location: 11773-12010 bp Feature: domain Description: YkfC Location: 11773-12010 bp Feature: domain Description: McrA Location: 12043-12328 bp Feature: domain Description: McrA Location: 1204 3-12328 bp Feature: gene Location: 13204-14940 bp Ori: KKD37454.1 Feature: domain Description: RVT_N Location: 13240-13486 bp Feature: domain Description: RVT_N Location: 1324 0-134 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13528-14236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13528-14 236 bp Feature: domain Description: GIIM Note: maturase Location: 14335-14566 bp Feature: domain Description: GIIM Note: maturase Location: 14 335-14 566 bp Feature: domain Description: HNHc Note: nucleases Location: 14767-14914 bp Feature: domain Description: HNHc Note: nucleases Location: 14 767-14 914 bp Feature: gene Location: 15742-16002 bp Feature: gene Location: 16265-16603 bp Ori: KKD37452.1 Feature: domain Description: HTH_XRE Location: 16283-16460 bp Feature: domain Description: HTH_XRE Location: 16283-164 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), McrA (COG4058), GIIM (pfam08388), HNHc (smart00507), HTH_XRE (smart00530)

Seq: LATL02000228.1 Limnoraphis robusta CS-951 contig228, whole genome shotgun sequence (12542 bp)
Overview 1 RT 1: 1-2202 bp Neighborhood of RT #1 [1, 2202] RVT_N RVT-GII Feature: gene Location: 1-909 bp Ori: KMW70222.1 Feature: domain Description: RVT_N Location: 34-280 bp Feature: domain Description: RVT_N Location: 34-280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322-910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322-910 bp Feature: gene Location: 1041-1265 bp Feature: gene Location: 1900-2202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LATL02000094.1 Limnoraphis robusta CS-951 contig094, whole genome shotgun sequence (30322 bp)
Overview 1 RT 1: 7943-12899 bp Neighborhood of RT #1 [7943, 13057] psaI RVT-UNC DUF1848 Feature: gene Location: 7943-8059 bp Ori: KKD36967.1 Gene: psaI Feature: domain Description: psaI Location: 7946-8057 bp Feature: domain Description: psaI Location: 7946 -8057 bp Feature: gene Location: 8410-8787 bp Feature: gene Location: 8780-10354 bp Ori: KMW70670.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 8804-9107 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 8804-9107 bp Feature: gene Location: 10464-12029 bp Feature: gene Location: 12089-13057 bp Ori: KKD36983.1 Feature: domain Description: DUF1848 Location: 12098-12899 bp Feature: domain Description: DUF1848 Location: 12098-12899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psaI (PRK11877), RVT-UG25/RVT-CRISPR/RVT-UG1(RVT-UNC), DUF1848 (pfam08902)