myRT

myRT report for GCA_000978515.1_ASM97851v1

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Seq: LBHA01000141.1 Kitasatospora aureofaciens strain NRRL 2209 B2209_contig_141, whole genome shotgun sequence (15423 bp)
Overview 1 RT 1: 2-6846 bp Neighborhood of RT #1 [2, 6857] HTH_ARSR nicotinamidase_related RVT_N RVT-GII GIIM HNH GlxA BaeS Feature: gene Location: 2-967 bp Feature: domain Description: HTH_ARSR Location: 782-959 bp Feature: domain Description: HTH_ARSR Location: 782-959 bp Feature: gene Location: 1088-1567 bp Feature: domain Description: nicotinamidase_related Location: 1103-1502 bp Feature: domain Description: nicotinamidase_related Location: 1 1 03-1 502 bp Feature: gene Location: 1680-3437 bp Feature: RT Description: RVT_N Location: 1746-1992 bp Feature: RT Description: RVT_N Location: 1 746-1 992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040-2691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040-2691 bp Feature: domain Description: GIIM Note: maturase Location: 2742-2976 bp Feature: domain Description: GIIM Note: maturase Location: 2742-2976 bp Feature: domain Description: HNH Note: nucleases Location: 3306-3405 bp Feature: domain Description: HNH Note: nucleases Location: 3306-3405 bp Feature: gene Location: 4332-5333 bp Feature: domain Description: GlxA Location: 4341-5310 bp Feature: domain Description: GlxA Location: 4341 -531 0 bp Feature: gene Location: 5388-6857 bp Feature: domain Description: BaeS Location: 5886-6846 bp Feature: domain Description: BaeS Location: 5886-6846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nicotinamidase_related (cd01014), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HTH_ARSR (smart00418), BaeS (COG0642)

Seq: LBHA01000018.1 Kitasatospora aureofaciens strain NRRL 2209 B2209_contig_18, whole genome shotgun sequence (36619 bp)
Overview 1 RT 1: 892-7197 bp Neighborhood of RT #1 [892, 7238] M48_Ste24p_like RVT-GII Intron_maturas2 HNHc carb_red_PTCR-like_SDR_c HTH_31 MLTR_LBD Feature: gene Location: 892-2241 bp Feature: domain Description: M48_Ste24p_like Location: 1279-2128 bp Feature: domain Description: M48_Ste2 4p_like Location: 12 79-2 12 8 bp Feature: gene Location: 2766-4568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3027-3825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 7-382 5 bp Feature: domain Description: Intron_maturas2 Location: 3960-4197 bp Feature: domain Description: Intron_maturas2 Location: 3960-4197 bp Feature: domain Description: HNHc Note: nucleases Location: 4362-4524 bp Feature: domain Description: HNHc Note: nucleases Location: 4362 -452 4 bp Feature: gene Location: 5556-7451 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 6762-7446 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 6762 -7446 bp Feature: gene Location: 6369-7238 bp Feature: domain Description: HTH_31 Location: 6399-6633 bp Feature: domain Description: HTH_31 Location: 6399-6633 bp Feature: domain Description: MLTR_LBD Location: 6690-7197 bp Feature: domain Description: MLTR_LBD Location: 6690-7197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), carb_red_PTCR-like_SDR_c (cd05324), HTH_31 (pfam13560), MLTR_LBD (pfam17765), M48_Ste24p_like (cd07328)

Seq: LBHA01000342.1 Kitasatospora aureofaciens strain NRRL 2209 B2209_contig_342, whole genome shotgun sequence (12432 bp)
Overview 1 RT 1: 9199-10996 bp Neighborhood of RT #1 [9199, 11109] HEAT_2 HEAT_2 RVT-GII GIIM Feature: gene Location: 9199-9912 bp Feature: domain Description: HEAT_2 Location: 9313-9571 bp Feature: domain Description: HEAT_2 Location: 93 13 -9571 bp Feature: domain Description: HEAT_2 Location: 9715-9814 bp Feature: domain Description: HEAT_2 Location: 9715-9814 bp Feature: gene Location: 9993-10559 bp Feature: gene Location: 10300-11109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10303-10762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 03 -10762 bp Feature: domain Description: GIIM Note: maturase Location: 10840-10996 bp Feature: domain Description: GIIM Note: maturase Location: 10840-10996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HEAT_2 (pfam13646)

Seq: LBHA01000356.1 Kitasatospora aureofaciens strain NRRL 2209 B2209_contig_356, whole genome shotgun sequence (42942 bp)
Overview 1 RT 1: 16505-21071 bp Neighborhood of RT #1 [16505, 21071] MFS_MefA_like RVT_N RVT-GII GIIM Tra8 Tra8 Feature: gene Location: 16505-16801 bp Feature: domain Description: MFS_MefA_like Location: 16616-16772 bp Feature: domain Description: MFS_MefA_like Location: 16616-16772 bp Feature: gene Location: 16851-17180 bp Feature: gene Location: 17609-19420 bp Feature: RT Description: RVT_N Location: 17702-17939 bp Feature: RT Description: RVT_N Location: 17702-17939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17999-18659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17999-18659 bp Feature: domain Description: GIIM Note: maturase Location: 18713-18944 bp Feature: domain Description: GIIM Note: maturase Location: 18713-1894 4 bp Feature: gene Location: 20038-20682 bp Feature: domain Description: Tra8 Location: 20044-20242 bp Feature: domain Description: Tra8 Location: 2004 4 -2024 2 bp Feature: domain Description: Tra8 Location: 20341-20635 bp Feature: domain Description: Tra8 Location: 2034 1-20635 bp Feature: gene Location: 20700-21071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tra8 (COG2826)

Seq: LBHA01000469.1 Kitasatospora aureofaciens strain NRRL 2209 B2209_contig_469, whole genome shotgun sequence (17815 bp)
Overview 1 RT 1: 3557-7042 bp Neighborhood of RT #1 [3557, 7065] RVT-GII HTH_1 PBP2_LTTR_like_6 Feature: gene Location: 3557-3703 bp Feature: gene Location: 3956-4219 bp Feature: gene Location: 4527-5345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4728-5169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4728-5 169 bp Feature: gene Location: 5497-5967 bp Feature: gene Location: 6178-7065 bp Feature: domain Description: HTH_1 Location: 6190-6364 bp Feature: domain Description: HTH_1 Location: 6190-6364 bp Feature: domain Description: PBP2_LTTR_like_6 Location: 6460-7042 bp Feature: domain Description: PBP2_LTTR_like_6 Location: 6460-7042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_1 (pfam00126), PBP2_LTTR_like_6 (cd08423)