myRT

myRT report for GCA_000978935.1_gtlEnvA5udCFS

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Seq: JJPF01000139.1 Methanosarcina mazei strain 3.F.A.2.5 scaffold11_1_size151849-refined, whole genome shotgun sequence (151407 bp)
Overview 1 RT 1: 3724-6205 bp Neighborhood of RT #1 [3724, 6525] Cmr1 Cmr1 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 3724-4557 bp Ori: KKG39120.1 Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: gene Location: 4605-5264 bp Ori: KKG39121.1 Feature: domain Description: Cas6b_N Location: 4611-4911 bp Feature: domain Description: Cas6b_N Location: 461 1 -491 1 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: gene Location: 5401-6525 bp Ori: KKG39122.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581-6205 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581 -6205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr1 (COG1367), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR

Seq: JJPF01000021.1 Methanosarcina mazei strain 3.F.A.2.5 scaffold27_1_size44125-refined, whole genome shotgun sequence (44125 bp)
Overview 1 RT 1: 12461-21238 bp Neighborhood of RT #1 [12461, 21243] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12461-12853 bp Ori: KKG45869.1 Feature: domain Description: YkvA Location: 12560-12848 bp Feature: domain Description: YkvA Location: 12 560-12 848 bp Feature: gene Location: 13471-13767 bp Ori: KKG45870.1 Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: gene Location: 14762-16444 bp Ori: KKG45871.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002 -15542 bp Feature: gene Location: 16460-19354 bp Ori: KKG45872.1 Feature: domain Description: Lhr Location: 16475-18986 bp Feature: domain Description: Lhr Location: 16475-18986 bp Feature: gene Location: 19708-21243 bp Ori: KKG45873.1 Feature: domain Description: lysS Location: 19801-21238 bp Feature: domain Description: lysS Location: 19801-2 12 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPF01000057.1 Methanosarcina mazei strain 3.F.A.2.5 scaffold53_1_size32224-refined, whole genome shotgun sequence (31866 bp)
Overview 1 RT 1: 2189-6211 bp Neighborhood of RT #1 [2189, 6264] COG4584 RVT_N RVT-GII GIIM COG4584 DUF2683 Feature: gene Location: 2189-2938 bp Ori: KKG43810.1 Feature: domain Description: COG4584 Location: 2258-2540 bp Feature: domain Description: COG4584 Location: 2258-2540 bp Feature: gene Location: 2970-4469 bp Ori: KKG43811.1 Feature: domain Description: RVT_N Location: 3039-3282 bp Feature: domain Description: RVT_N Location: 3 03 9-3 282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327-3984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 27-3 984 bp Feature: domain Description: GIIM Note: maturase Location: 4038-4269 bp Feature: domain Description: GIIM Note: maturase Location: 403 8-4269 bp Feature: gene Location: 4897-5586 bp Ori: KKG43812.1 Feature: domain Description: COG4584 Location: 4900-5467 bp Feature: domain Description: COG4584 Location: 4900-5467 bp Feature: gene Location: 5983-6264 bp Ori: KKG43813.1 Feature: domain Description: DUF2683 Location: 5998-6211 bp Feature: domain Description: DUF2683 Location: 5998-6211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2683 (pfam10884)