myRT

myRT report for GCA_000978955.1_gtlEnvA5udCFS

Download annotations/find similar RTs

Seq: JJOU01000213.1 Methanosarcina mazei strain 2.F.T.2.6 scaffold38_1_size33912-refined, whole genome shotgun sequence (33912 bp)
Overview 1 RT 1: 12461-21238 bp Neighborhood of RT #1 [12461, 21243] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12461-12853 bp Ori: KKG08563.1 Feature: domain Description: YkvA Location: 12560-12848 bp Feature: domain Description: YkvA Location: 1 2560-1 2848 bp Feature: gene Location: 13471-13767 bp Ori: KKG08564.1 Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: domain Description: COG1 669 Location: 1 3474-1 3756 bp Feature: gene Location: 14762-16444 bp Ori: KKG08565.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5002-1 5542 bp Feature: gene Location: 16460-19354 bp Ori: KKG08566.1 Feature: domain Description: Lhr Location: 16475-18986 bp Feature: domain Description: Lhr Location: 1 6475-1 8986 bp Feature: gene Location: 19708-21243 bp Ori: KKG08567.1 Feature: domain Description: lysS Location: 19801-21238 bp Feature: domain Description: lysS Location: 1 9801 -21 238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJOU01000198.1 Methanosarcina mazei strain 2.F.T.2.6 scaffold43_1_size31934-refined, whole genome shotgun sequence (31635 bp)
Overview 1 RT 1: 1997-6019 bp Neighborhood of RT #1 [1997, 6072] COG4584 RVT_N RVT-GII GIIM COG4584 DUF2683 Feature: gene Location: 1997-2746 bp Ori: KKG09453.1 Feature: domain Description: COG4584 Location: 2066-2348 bp Feature: domain Description: COG4584 Location: 2 066-2 348 bp Feature: gene Location: 2778-4277 bp Ori: KKG09454.1 Feature: domain Description: RVT_N Location: 2847-3090 bp Feature: domain Description: RVT_N Location: 2 847-3090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135-3792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135-3792 bp Feature: domain Description: GIIM Note: maturase Location: 3846-4077 bp Feature: domain Description: GIIM Note: maturase Location: 3846-4077 bp Feature: gene Location: 4705-5394 bp Ori: KKG09455.1 Feature: domain Description: COG4584 Location: 4708-5275 bp Feature: domain Description: COG4584 Location: 4708-52 75 bp Feature: gene Location: 5791-6072 bp Ori: KKG09456.1 Feature: domain Description: DUF2683 Location: 5806-6019 bp Feature: domain Description: DUF2 683 Location: 5806-6019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2683 (pfam10884)

Seq: JJOU01000103.1 Methanosarcina mazei strain 2.F.T.2.6 scaffold12_1_size52753-refined, whole genome shotgun sequence (52653 bp)
Overview 1 RT 1: 35549-37417 bp Neighborhood of RT #1 [35549, 37962] RVT-CRISPR GIIM Cas6b_N Cas6b_C Cmr1 Feature: gene Location: 35549-35995 bp Ori: KKG14588.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 35552-35669 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 5552-3 5669 bp Feature: domain Description: GIIM Note: maturase Location: 35831-35990 bp Feature: domain Description: GIIM Note: maturase Location: 3 583 1-3 5990 bp Feature: gene Location: 36133-36792 bp Ori: KKG14589.1 Feature: domain Description: Cas6b_N Location: 36139-36439 bp Feature: domain Description: Cas6b_N Location: 3 613 9-3 643 9 bp Feature: domain Description: Cas6b_C Location: 36451-36784 bp Feature: domain Description: Cas6b_C Location: 3 6451-3 6784 bp Feature: gene Location: 36859-37962 bp Ori: KKG14590.1 Feature: domain Description: Cmr1 Location: 36865-37417 bp Feature: domain Description: Cmr1 Location: 3 6865-3 7417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)