myRT

myRT report for GCA_000978965.1_gtlEnvA5udCFS

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Seq: JJPI01000071.1 Methanosarcina mazei strain 3.F.T.1A.1 scaffold19_1_size57937-refined, whole genome shotgun sequence (57530 bp)
Overview 1 RT 1: 45523-48549 bp Neighborhood of RT #1 [45523, 48677] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 45523-46647 bp Ori: KKG54565.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 45703-46327 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 45703-46327 bp Feature: gene Location: 46769-47443 bp Ori: KKG54566.1 Feature: domain Description: Cas6b_N Location: 46790-47090 bp Feature: domain Description: Cas6b_N Location: 46790-47090 bp Feature: domain Description: Cas6b_C Location: 47102-47435 bp Feature: domain Description: Cas6b_C Location: 471 02-47435 bp Feature: gene Location: 47484-48677 bp Ori: KKG54567.1 Feature: domain Description: DUF1887 Location: 47628-47850 bp Feature: domain Description: DUF1 887 Location: 47628-47850 bp Feature: domain Description: DUF1887 Location: 48249-48549 bp Feature: domain Description: DUF1 887 Location: 48249-48549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)

Seq: JJPI01000009.1 Methanosarcina mazei strain 3.F.T.1A.1 scaffold26_1_size47240-refined, whole genome shotgun sequence (46884 bp)
Overview 1 RT 1: 42055-46139 bp Neighborhood of RT #1 [42055, 46139] RVT_N RVT-GII GIIM Feature: gene Location: 42055-42249 bp Feature: gene Location: 42379-42621 bp Feature: gene Location: 43276-44754 bp Ori: KKG58387.1 Feature: domain Description: RVT_N Location: 43366-43606 bp Feature: domain Description: RVT_N Location: 43366-43606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43654-44290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43654-442 90 bp Feature: domain Description: GIIM Note: maturase Location: 44341-44575 bp Feature: domain Description: GIIM Note: maturase Location: 44341-44575 bp Feature: gene Location: 45822-46139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JJPI01000113.1 Methanosarcina mazei strain 3.F.T.1A.1 scaffold56_1_size25560-refined, whole genome shotgun sequence (25032 bp)
Overview 1 RT 1: 966-5573 bp Neighborhood of RT #1 [966, 5578] DnaC RVT_N RVT-GII GIIM COG4584 HicB Feature: gene Location: 966-1739 bp Ori: KKG52039.1 Feature: domain Description: DnaC Location: 969-1713 bp Feature: domain Description: DnaC Location: 969-1713 bp Feature: gene Location: 1925-2176 bp Feature: gene Location: 2517-4016 bp Ori: KKG52041.1 Feature: domain Description: RVT_N Location: 2586-2829 bp Feature: domain Description: RVT_N Location: 2586-2829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2874-3531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2874-3 53 1 bp Feature: domain Description: GIIM Note: maturase Location: 3585-3816 bp Feature: domain Description: GIIM Note: maturase Location: 3 585-3 816 bp Feature: gene Location: 4438-5127 bp Ori: KKG52042.1 Feature: domain Description: COG4584 Location: 4441-5008 bp Feature: domain Description: COG4584 Location: 4441-5008 bp Feature: gene Location: 5348-5578 bp Ori: KKG52043.1 Feature: domain Description: HicB Location: 5405-5573 bp Feature: domain Description: HicB Location: 5405-5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaC (COG1484), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), HicB (pfam05534)

Seq: JJPI01000124.1 Methanosarcina mazei strain 3.F.T.1A.1 scaffold17_1_size63529-refined, whole genome shotgun sequence (63529 bp)
Overview 1 RT 1: 930-6972 bp Neighborhood of RT #1 [930, 7238] Type_II_cohesin Big_9 Big_9 Dockerin_II RVT-GII GIIM HNHc MATE_Wzx_like Feature: gene Location: 930-3557 bp Ori: KKG51273.1 Feature: domain Description: Type_II_cohesin Location: 2442-2805 bp Feature: domain Description: Type_II_cohesin Location: 24 4 2-2805 bp Feature: domain Description: Big_9 Location: 2811-3063 bp Feature: domain Description: Big_9 Location: 2811-3063 bp Feature: domain Description: Big_9 Location: 3081-3327 bp Feature: domain Description: Big_9 Location: 3081-3327 bp Feature: domain Description: Dockerin_II Location: 3387-3543 bp Feature: domain Description: Dockerin_II Location: 3387-354 3 bp Feature: gene Location: 4513-4791 bp Ori: KKG51274.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4546-4690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 54 6-4 690 bp Feature: gene Location: 4804-5331 bp Ori: KKG51275.1 Feature: domain Description: GIIM Note: maturase Location: 4807-4975 bp Feature: domain Description: GIIM Note: maturase Location: 4 807-4 975 bp Feature: domain Description: HNHc Note: nucleases Location: 5161-5320 bp Feature: domain Description: HNHc Note: nucleases Location: 5161-5320 bp Feature: gene Location: 5769-7238 bp Ori: KKG51276.1 Feature: domain Description: MATE_Wzx_like Location: 5790-6972 bp Feature: domain Description: MATE_Wzx_like Location: 5790-6972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254), RVT-GII, GIIM (pfam08388), HNHc (smart00507), MATE_Wzx_like (cd13128)