myRT

myRT report for GCA_000979015.1_gtlEnvA5udCFS

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Seq: JJPO01000135.1 Methanosarcina mazei strain 3.H.A.2.1 scaffold2_1_size120182-refined, whole genome shotgun sequence (119540 bp)
Overview 1 RT 1: 101472-110249 bp Neighborhood of RT #1 [101472, 110254] lysS Lhr RVT-Retrons COG1669 YkvA Feature: gene Location: 101472-103007 bp Ori: KKG70441.1 Feature: domain Description: lysS Location: 101565-103002 bp Feature: domain Description: lysS Location: 1 01 565-1 03002 bp Feature: gene Location: 103361-106255 bp Ori: KKG70442.1 Feature: domain Description: Lhr Location: 103376-105887 bp Feature: domain Description: Lhr Location: 1 03376-1 05887 bp Feature: gene Location: 106271-107953 bp Ori: KKG70443.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106511-107051 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0651 1 -1 07051 bp Feature: gene Location: 108948-109244 bp Ori: KKG70444.1 Feature: domain Description: COG1669 Location: 108951-109233 bp Feature: domain Description: COG1 669 Location: 1 08951 -1 09233 bp Feature: gene Location: 109862-110254 bp Ori: KKG70445.1 Feature: domain Description: YkvA Location: 109961-110249 bp Feature: domain Description: YkvA Location: 1 09961 -1 1 0249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lysS (PRK02983), Lhr (COG1201), RVT-Retrons, COG1669 (Predicted nucleotidyltransferase ), YkvA (COG3339)

Seq: JJPO01000025.1 Methanosarcina mazei strain 3.H.A.2.1 scaffold8_1_size73144-refined, whole genome shotgun sequence (73044 bp)
Overview 1 RT 1: 52248-54996 bp Neighborhood of RT #1 [52248, 55049] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 52248-53372 bp Ori: KKG75803.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 52428-53052 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 52 42 8-53052 bp Feature: gene Location: 53494-54168 bp Ori: KKG75804.1 Feature: domain Description: Cas6b_N Location: 53515-53815 bp Feature: domain Description: Cas6b_N Location: 53515-53815 bp Feature: domain Description: Cas6b_C Location: 53827-54160 bp Feature: domain Description: Cas6b_C Location: 5382 7-54160 bp Feature: gene Location: 54216-55049 bp Ori: KKG75805.1 Feature: domain Description: Cmr1 Location: 54225-54666 bp Feature: domain Description: Cmr1 Location: 542 2 5-54666 bp Feature: domain Description: Cmr1 Location: 54894-54996 bp Feature: domain Description: Cmr1 Location: 54894-54996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)

Seq: JJPO01000029.1 Methanosarcina mazei strain 3.H.A.2.1 scaffold41_1_size57220-refined, whole genome shotgun sequence (56721 bp)
Overview 1 RT 1: 27621-31185 bp Neighborhood of RT #1 [27621, 31185] COG4584 RVT_N RVT-GII GIIM Feature: gene Location: 27621-27977 bp Feature: gene Location: 27922-28611 bp Ori: KKG75484.1 Feature: domain Description: COG4584 Location: 27925-28492 bp Feature: domain Description: COG4584 Location: 27925-28492 bp Feature: gene Location: 29033-30532 bp Ori: KKG75485.1 Feature: domain Description: RVT_N Location: 29102-29345 bp Feature: domain Description: RVT_N Location: 29102-293 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29390-30047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 90-3 0047 bp Feature: domain Description: GIIM Note: maturase Location: 30101-30332 bp Feature: domain Description: GIIM Note: maturase Location: 3 0101-3 03 3 2 bp Feature: gene Location: 30964-31185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)