myRT

myRT report for GCA_000979025.1_gtlEnvA5udCFS

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Seq: JJPR01000074.1 Methanosarcina mazei strain 3.H.A.2.6 scaffold15_1_size79429-refined, whole genome shotgun sequence (79330 bp)
Overview 1 RT 1: 71937-79232 bp Neighborhood of RT #1 [71937, 79276] lysS Lhr RVT-Retrons HTH_23 Tra5 Feature: gene Location: 71937-73472 bp Feature: domain Description: lysS Location: 72030-73467 bp Feature: domain Description: lysS Location: 72030-73467 bp Feature: gene Location: 73826-76720 bp Feature: domain Description: Lhr Location: 73841-76352 bp Feature: domain Description: Lhr Location: 73841 -76352 bp Feature: gene Location: 76736-78265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76823-77363 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 76823-77363 bp Feature: gene Location: 78359-79276 bp Feature: domain Description: HTH_23 Location: 78380-78488 bp Feature: domain Description: HTH_23 Location: 78380-78488 bp Feature: domain Description: Tra5 Location: 78524-79232 bp Feature: domain Description: Tra5 Location: 78524-79232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lysS (PRK02983), Lhr (COG1201), RVT-Retrons, HTH_23 (pfam13384), Tra5 (COG2801)

Seq: JJPR01000126.1 Methanosarcina mazei strain 3.H.A.2.6 scaffold127_1_size4776-refined, whole genome shotgun sequence (4776 bp)
Overview 1 RT 1: 1715-4125 bp Neighborhood of RT #1 [1715, 4325] COG4584 RVT_N RVT-GII GIIM Feature: gene Location: 1715-2404 bp Feature: domain Description: COG4584 Location: 1718-2285 bp Feature: domain Description: COG4584 Location: 1718-2 2 85 bp Feature: gene Location: 2826-4325 bp Feature: RT Description: RVT_N Location: 2895-3138 bp Feature: RT Description: RVT_N Location: 2 895-3138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3183-3840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3183-3840 bp Feature: domain Description: GIIM Note: maturase Location: 3894-4125 bp Feature: domain Description: GIIM Note: maturase Location: 3894-412 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)