myRT

myRT report for GCA_000979035.1_gtlEnvA5udCFS

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Seq: JJPU01000057.1 Methanosarcina mazei strain 3.H.M.1B.1 scaffold93_1_size16043-refined, whole genome shotgun sequence (15943 bp)
Overview 1 RT 1: 12845-15706 bp Neighborhood of RT #1 [12845, 15906] HicB COG4584 RVT_N RVT-GII GIIM Feature: gene Location: 12845-13075 bp Ori: KKG99280.1 Feature: domain Description: HicB Location: 12902-13070 bp Feature: domain Description: HicB Location: 1 2902-1 3070 bp Feature: gene Location: 13296-13985 bp Ori: KKG99281.1 Feature: domain Description: COG4584 Location: 13299-13866 bp Feature: domain Description: COG4584 Location: 1 3299-1 3866 bp Feature: gene Location: 14407-15906 bp Ori: KKG99282.1 Feature: domain Description: RVT_N Location: 14476-14719 bp Feature: domain Description: RVT_N Location: 1 4476-1 471 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14764-15421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4764-1 5421 bp Feature: domain Description: GIIM Note: maturase Location: 15475-15706 bp Feature: domain Description: GIIM Note: maturase Location: 1 5475-1 5706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JJPU01000010.1 Methanosarcina mazei strain 3.H.M.1B.1 scaffold48_1_size27767-refined, whole genome shotgun sequence (27469 bp)
Overview 1 RT 1: 15671-18697 bp Neighborhood of RT #1 [15671, 18825] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 15671-16795 bp Ori: KKH02697.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15851-16475 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15851-16475 bp Feature: gene Location: 16917-17591 bp Ori: KKH02698.1 Feature: domain Description: Cas6b_N Location: 16938-17238 bp Feature: domain Description: Cas6b_N Location: 16938-172 38 bp Feature: domain Description: Cas6b_C Location: 17250-17583 bp Feature: domain Description: Cas6b_C Location: 172 50-17583 bp Feature: gene Location: 17632-18825 bp Ori: KKH02699.1 Feature: domain Description: DUF1887 Location: 17776-17998 bp Feature: domain Description: DUF1887 Location: 17776-17998 bp Feature: domain Description: DUF1887 Location: 18397-18697 bp Feature: domain Description: DUF1887 Location: 18397-18697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)

Seq: JJPU01000067.1 Methanosarcina mazei strain 3.H.M.1B.1 scaffold26_1_size40804-refined, whole genome shotgun sequence (40709 bp)
Overview 1 RT 1: 31913-39569 bp Neighborhood of RT #1 [31913, 39580] MATE_Wzx_like GIIM HNHc RVT-GII Type_II_cohesin Big_9 Big_9 Dockerin_II Y1_Tnp Feature: gene Location: 31913-33382 bp Ori: KKG98717.1 Feature: domain Description: MATE_Wzx_like Location: 31934-33116 bp Feature: domain Description: MATE_Wzx_like Location: 3 193 4-3 3 116 bp Feature: gene Location: 33820-34347 bp Ori: KKG98718.1 Feature: domain Description: GIIM Note: maturase Location: 33823-33991 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 823 -3 3 991 bp Feature: domain Description: HNHc Note: nucleases Location: 34177-34336 bp Feature: domain Description: HNHc Note: nucleases Location: 3 4177-3 43 3 6 bp Feature: gene Location: 34360-34638 bp Ori: KKG98719.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34393-34537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 43 93 -3 453 7 bp Feature: gene Location: 35594-38221 bp Ori: KKG98720.1 Feature: domain Description: Type_II_cohesin Location: 37106-37469 bp Feature: domain Description: Type_II_cohesin Location: 3 7106-3 7469 bp Feature: domain Description: Big_9 Location: 37475-37727 bp Feature: domain Description: Big_9 Location: 3 7475-3 7727 bp Feature: domain Description: Big_9 Location: 37745-37991 bp Feature: domain Description: Big_9 Location: 3 7745-3 7991 bp Feature: domain Description: Dockerin_II Location: 38051-38207 bp Feature: domain Description: Dockerin_II Location: 3 8051-3 8207 bp Feature: gene Location: 39170-39580 bp Ori: KKG98721.1 Feature: domain Description: Y1_Tnp Location: 39212-39569 bp Feature: domain Description: Y1_Tnp Location: 3 9212-3 9569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_Wzx_like (cd13128), GIIM (pfam08388), HNHc (smart00507), RVT-GII, Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254), Y1_Tnp (pfam01797)