myRT

myRT report for GCA_000979045.1_gtlEnvA5udCFS

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Seq: JJPW01000008.1 Methanosarcina mazei strain 3.H.M.1B.5 scaffold62_1_size30829-refined, whole genome shotgun sequence (30557 bp)
Overview 1 RT 1: 6281-10912 bp Neighborhood of RT #1 [6281, 10917] DnaC RVT_N RVT-GII GIIM COG4584 HicB Feature: gene Location: 6281-7078 bp Ori: KKH03837.1 Feature: domain Description: DnaC Location: 6284-7028 bp Feature: domain Description: DnaC Location: 6284-7028 bp Feature: gene Location: 7075-7530 bp Feature: gene Location: 7856-9355 bp Ori: KKH03839.1 Feature: domain Description: RVT_N Location: 7925-8168 bp Feature: domain Description: RVT_N Location: 7925-81 68 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8213-8870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821 3-8870 bp Feature: domain Description: GIIM Note: maturase Location: 8924-9155 bp Feature: domain Description: GIIM Note: maturase Location: 8924-91 55 bp Feature: gene Location: 9777-10466 bp Ori: KKH03840.1 Feature: domain Description: COG4584 Location: 9780-10347 bp Feature: domain Description: COG4584 Location: 9780-1 0347 bp Feature: gene Location: 10687-10917 bp Ori: KKH03841.1 Feature: domain Description: HicB Location: 10744-10912 bp Feature: domain Description: HicB Location: 1 0744-1 091 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaC (COG1484), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), HicB (pfam05534)

Seq: JJPW01000013.1 Methanosarcina mazei strain 3.H.M.1B.5 scaffold15_1_size63267-refined, whole genome shotgun sequence (63267 bp)
Overview 1 RT 1: 56030-62324 bp Neighborhood of RT #1 [56030, 62338] MATE_Wzx_like GIIM HNHc RVT-GII Type_II_cohesin Big_9 Big_9 Dockerin_II Feature: gene Location: 56030-57499 bp Ori: KKH03568.1 Feature: domain Description: MATE_Wzx_like Location: 56051-57233 bp Feature: domain Description: MATE_Wzx_like Location: 56051-572 33 bp Feature: gene Location: 57937-58464 bp Ori: KKH03569.1 Feature: domain Description: GIIM Note: maturase Location: 57940-58108 bp Feature: domain Description: GIIM Note: maturase Location: 57940-58108 bp Feature: domain Description: HNHc Note: nucleases Location: 58294-58453 bp Feature: domain Description: HNHc Note: nucleases Location: 582 94-58453 bp Feature: gene Location: 58477-58755 bp Ori: KKH03570.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58510-58654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58510-58654 bp Feature: gene Location: 59711-62338 bp Ori: KKH03571.1 Feature: domain Description: Type_II_cohesin Location: 61223-61586 bp Feature: domain Description: Type_II_cohesin Location: 612 2 3-61586 bp Feature: domain Description: Big_9 Location: 61592-61844 bp Feature: domain Description: Big_9 Location: 61592 -61844 bp Feature: domain Description: Big_9 Location: 61862-62108 bp Feature: domain Description: Big_9 Location: 61862 -62 108 bp Feature: domain Description: Dockerin_II Location: 62168-62324 bp Feature: domain Description: Dockerin_II Location: 62 168-62 32 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_Wzx_like (cd13128), GIIM (pfam08388), HNHc (smart00507), RVT-GII, Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254)

Seq: JJPW01000078.1 Methanosarcina mazei strain 3.H.M.1B.5 scaffold13_1_size132519-refined, whole genome shotgun sequence (132028 bp)
Overview 1 RT 1: 39705-42731 bp Neighborhood of RT #1 [39705, 42859] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 39705-40829 bp Ori: KKG98967.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39885-40509 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 9885-40509 bp Feature: gene Location: 40951-41625 bp Ori: KKG98968.1 Feature: domain Description: Cas6b_N Location: 40972-41272 bp Feature: domain Description: Cas6b_N Location: 40972-41272 bp Feature: domain Description: Cas6b_C Location: 41284-41617 bp Feature: domain Description: Cas6b_C Location: 41284-41617 bp Feature: gene Location: 41666-42859 bp Ori: KKG98969.1 Feature: domain Description: DUF1887 Location: 41810-42032 bp Feature: domain Description: DUF1887 Location: 41810-4203 2 bp Feature: domain Description: DUF1887 Location: 42431-42731 bp Feature: domain Description: DUF1887 Location: 4243 1-4273 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)