myRT

myRT report for GCA_000979115.1_gtlEnvA5udCFS

Download annotations/find similar RTs

Seq: JJQD01000055.1 Methanosarcina mazei strain 1.F.A.2.8 scaffold51_1_size22620-refined, whole genome shotgun sequence (22620 bp)
Overview 1 RT 1: 8402-10270 bp Neighborhood of RT #1 [8402, 10815] RVT-CRISPR GIIM Cas6b_N Cas6b_C Cmr1 Feature: gene Location: 8402-8848 bp Ori: KKH30586.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8405-8522 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 8405-8522 bp Feature: domain Description: GIIM Note: maturase Location: 8684-8843 bp Feature: domain Description: GIIM Note: maturase Location: 8684-8843 bp Feature: gene Location: 8986-9645 bp Ori: KKH30587.1 Feature: domain Description: Cas6b_N Location: 8992-9292 bp Feature: domain Description: Cas6b_N Location: 8992-9292 bp Feature: domain Description: Cas6b_C Location: 9304-9637 bp Feature: domain Description: Cas6b_C Location: 9304-9637 bp Feature: gene Location: 9712-10815 bp Ori: KKH30588.1 Feature: domain Description: Cmr1 Location: 9718-10270 bp Feature: domain Description: Cmr1 Location: 971 8-1 0270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)

Seq: JJQD01000020.1 Methanosarcina mazei strain 1.F.A.2.8 scaffold70_1_size22676-refined, whole genome shotgun sequence (22383 bp)
Overview 1 RT 1: 177-3384 bp Neighborhood of RT #1 [177, 3395] RVT_N RVT-GII GIIM HicB YcfA Feature: gene Location: 177-1676 bp Ori: KKH32492.1 Feature: domain Description: RVT_N Location: 246-489 bp Feature: domain Description: RVT_N Location: 2 46-489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1191 bp Feature: domain Description: GIIM Note: maturase Location: 1245-1476 bp Feature: domain Description: GIIM Note: maturase Location: 12 45-1476 bp Feature: gene Location: 2948-3178 bp Ori: KKH32493.1 Feature: domain Description: HicB Location: 3005-3173 bp Feature: domain Description: HicB Location: 3005-3173 bp Feature: gene Location: 3201-3395 bp Ori: KKH32494.1 Feature: domain Description: YcfA Location: 3204-3384 bp Feature: domain Description: YcfA Location: 32 04-3384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HicB (pfam05534), YcfA (COG1724)