myRT

myRT report for GCA_000979125.1_gtlEnvA5udCFS

Download annotations/find similar RTs

Seq: JJQE01000040.1 Methanosarcina mazei strain 1.F.M.0.5 scaffold10_1_size131935-refined, whole genome shotgun sequence (131273 bp)
Overview 1 RT 1: 3724-6205 bp Neighborhood of RT #1 [3724, 6525] Cmr1 Cmr1 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 3724-4557 bp Ori: KKH30938.1 Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: gene Location: 4605-5264 bp Ori: KKH30939.1 Feature: domain Description: Cas6b_N Location: 4611-4911 bp Feature: domain Description: Cas6b_N Location: 461 1 -491 1 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: gene Location: 5401-6525 bp Ori: KKH30940.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581-6205 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581 -6205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr1 (COG1367), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR

Seq: JJQE01000073.1 Methanosarcina mazei strain 1.F.M.0.5 scaffold49_1_size29342-refined, whole genome shotgun sequence (29142 bp)
Overview 1 RT 1: 136-3328 bp Neighborhood of RT #1 [136, 3381] RVT_N RVT-GII GIIM COG4584 DUF2683 Feature: gene Location: 136-1635 bp Ori: KKH29368.1 Feature: domain Description: RVT_N Location: 205-448 bp Feature: domain Description: RVT_N Location: 2 05-448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493-1150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493-1150 bp Feature: domain Description: GIIM Note: maturase Location: 1204-1435 bp Feature: domain Description: GIIM Note: maturase Location: 12 04-1435 bp Feature: gene Location: 2014-2703 bp Ori: KKH29369.1 Feature: domain Description: COG4584 Location: 2017-2584 bp Feature: domain Description: COG4584 Location: 2 017-2 584 bp Feature: gene Location: 3100-3381 bp Ori: KKH29370.1 Feature: domain Description: DUF2683 Location: 3115-3328 bp Feature: domain Description: DUF2 683 Location: 3115-332 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), DUF2683 (pfam10884)

Seq: JJQE01000098.1 Methanosarcina mazei strain 1.F.M.0.5 scaffold29_1_size44125-refined, whole genome shotgun sequence (44125 bp)
Overview 1 RT 1: 12461-21238 bp Neighborhood of RT #1 [12461, 21243] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12461-12853 bp Ori: KKH27899.1 Feature: domain Description: YkvA Location: 12560-12848 bp Feature: domain Description: YkvA Location: 12560-12848 bp Feature: gene Location: 13471-13767 bp Ori: KKH27900.1 Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: domain Description: COG1669 Location: 13 474-13 756 bp Feature: gene Location: 14762-16444 bp Ori: KKH27901.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: gene Location: 16460-19354 bp Ori: KKH27902.1 Feature: domain Description: Lhr Location: 16475-18986 bp Feature: domain Description: Lhr Location: 16475-18986 bp Feature: gene Location: 19708-21243 bp Ori: KKH27903.1 Feature: domain Description: lysS Location: 19801-21238 bp Feature: domain Description: lysS Location: 19801-2123 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)