myRT

myRT report for GCA_000979185.1_gtlEnvA5udCFS

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Seq: JJQI01000084.1 Methanosarcina mazei strain 1.H.A.1A.4 scaffold20_1_size52345-refined, whole genome shotgun sequence (52327 bp)
Overview 1 RT 1: 2562-6631 bp Neighborhood of RT #1 [2562, 6631] DUF2683 COG4584 RVT_N RVT-GII GIIM Feature: gene Location: 2562-2843 bp Ori: KKH38105.1 Feature: domain Description: DUF2683 Location: 2577-2790 bp Feature: domain Description: DUF2683 Location: 2577-2790 bp Feature: gene Location: 3240-3929 bp Ori: KKH38106.1 Feature: domain Description: COG4584 Location: 3243-3810 bp Feature: domain Description: COG4584 Location: 3243-381 0 bp Feature: gene Location: 4351-5850 bp Ori: KKH38107.1 Feature: domain Description: RVT_N Location: 4420-4663 bp Feature: domain Description: RVT_N Location: 4420-4663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4708-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4708-5365 bp Feature: domain Description: GIIM Note: maturase Location: 5419-5650 bp Feature: domain Description: GIIM Note: maturase Location: 541 9-5650 bp Feature: gene Location: 6191-6388 bp Feature: gene Location: 6392-6631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2683 (pfam10884), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JJQI01000110.1 Methanosarcina mazei strain 1.H.A.1A.4 scaffold18_1_size54713-refined, whole genome shotgun sequence (54688 bp)
Overview 1 RT 1: 20925-23333 bp Neighborhood of RT #1 [20925, 23338] Cmr1 Cas6b_N Cas6b_C RVT-CRISPR GIIM Feature: gene Location: 20925-22028 bp Ori: KKH36278.1 Feature: domain Description: Cmr1 Location: 20931-21483 bp Feature: domain Description: Cmr1 Location: 2 0931-2 1483 bp Feature: gene Location: 22095-22754 bp Ori: KKH36279.1 Feature: domain Description: Cas6b_N Location: 22101-22401 bp Feature: domain Description: Cas6b_N Location: 2 2 101-2 2 401 bp Feature: domain Description: Cas6b_C Location: 22413-22746 bp Feature: domain Description: Cas6b_C Location: 2 2 413-2 2 746 bp Feature: gene Location: 22892-23338 bp Ori: KKH36280.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22895-23012 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 2 895-2 3012 bp Feature: domain Description: GIIM Note: maturase Location: 23174-23333 bp Feature: domain Description: GIIM Note: maturase Location: 2 3174-2 3333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr1 (COG1367), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR, GIIM (pfam08388)