myRT

myRT report for GCA_000979255.1_gtlEnvA5udCFS

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Seq: JJQS01000096.1 Methanosarcina mazei strain 1.H.M.1A.2 scaffold57_1_size24278-refined, whole genome shotgun sequence (23978 bp)
Overview 1 RT 1: 1-2290 bp Neighborhood of RT #1 [1, 2290] RVT_N RVT-GII COG4584 Feature: gene Location: 1-608 bp Ori: KKH73675.1 Feature: domain Description: RVT_N Location: 70-313 bp Feature: domain Description: RVT_N Location: 70-31 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-607 bp Feature: gene Location: 1030-1719 bp Ori: KKH73676.1 Feature: domain Description: COG4584 Location: 1033-1600 bp Feature: domain Description: COG4584 Location: 1 033-1 600 bp Feature: gene Location: 1901-2290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG4584 (Transposase )

Seq: JJQS01000085.1 Methanosarcina mazei strain 1.H.M.1A.2 scaffold15_1_size83051-refined, whole genome shotgun sequence (82768 bp)
Overview 1 RT 1: 36380-39214 bp Neighborhood of RT #1 [36380, 39534] DUF1887 DUF1887 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 36380-37573 bp Ori: KKH74284.1 Feature: domain Description: DUF1887 Location: 36524-36746 bp Feature: domain Description: DUF1887 Location: 3652 4-36746 bp Feature: domain Description: DUF1887 Location: 37145-37445 bp Feature: domain Description: DUF1887 Location: 37145-37445 bp Feature: gene Location: 37614-38288 bp Ori: KKH74285.1 Feature: domain Description: Cas6b_N Location: 37635-37935 bp Feature: domain Description: Cas6b_N Location: 37635-37935 bp Feature: domain Description: Cas6b_C Location: 37947-38280 bp Feature: domain Description: Cas6b_C Location: 37947-382 80 bp Feature: gene Location: 38410-39534 bp Ori: KKH74286.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38590-39214 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38590-392 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1887 (pfam09002), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR