myRT

myRT report for GCA_000979335.1_gtlEnvA5udCFS

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Seq: JJOR01000003.1 Methanosarcina mazei strain 2.F.A.2.3 scaffold172_1_size3641-refined, whole genome shotgun sequence (3241 bp)
Overview 1 RT 1: 489-3237 bp Neighborhood of RT #1 [489, 3241] RVT_N RVT-GII GIIM COG4584 DnaC Feature: gene Location: 489-1988 bp Ori: KKG09340.1 Feature: domain Description: RVT_N Location: 558-801 bp Feature: domain Description: RVT_N Location: 558-801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 503 bp Feature: domain Description: GIIM Note: maturase Location: 1557-1788 bp Feature: domain Description: GIIM Note: maturase Location: 1 557-1 788 bp Feature: gene Location: 2020-2769 bp Ori: KKG09341.1 Feature: domain Description: COG4584 Location: 2089-2371 bp Feature: domain Description: COG4584 Location: 2089-2371 bp Feature: gene Location: 2766-3241 bp Ori: KKG09342.1 Feature: domain Description: DnaC Location: 2769-3237 bp Feature: domain Description: DnaC Location: 2769-3237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), DnaC (COG1484)

Seq: JJOR01000021.1 Methanosarcina mazei strain 2.F.A.2.3 scaffold9_1_size77439-refined, whole genome shotgun sequence (76880 bp)
Overview 1 RT 1: 49082-52108 bp Neighborhood of RT #1 [49082, 52236] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 49082-50206 bp Ori: KKG08049.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 49262-49886 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 492 62 -49886 bp Feature: gene Location: 50328-51002 bp Ori: KKG08050.1 Feature: domain Description: Cas6b_N Location: 50349-50649 bp Feature: domain Description: Cas6b_N Location: 50349-50649 bp Feature: domain Description: Cas6b_C Location: 50661-50994 bp Feature: domain Description: Cas6b_C Location: 50661-50994 bp Feature: gene Location: 51043-52236 bp Ori: KKG08051.1 Feature: domain Description: DUF1887 Location: 51187-51409 bp Feature: domain Description: DUF1887 Location: 51187-51409 bp Feature: domain Description: DUF1887 Location: 51808-52108 bp Feature: domain Description: DUF1887 Location: 51808-52 108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)