myRT

myRT report for GCA_000979345.1_gtlEnvA5udCFS

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Seq: JJOS01000067.1 Methanosarcina mazei strain 2.F.A.2.4 scaffold48_1_size35705-refined, whole genome shotgun sequence (35151 bp)
Overview 1 RT 1: 2025-5987 bp Neighborhood of RT #1 [2025, 5987] COG4584 RVT_N RVT-GII GIIM COG4584 Feature: gene Location: 2025-2774 bp Feature: domain Description: COG4584 Location: 2094-2376 bp Feature: domain Description: COG4584 Location: 2094-2376 bp Feature: gene Location: 2806-4305 bp Feature: RT Description: RVT_N Location: 2875-3118 bp Feature: RT Description: RVT_N Location: 2875-31 1 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163-3820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 63-3820 bp Feature: domain Description: GIIM Note: maturase Location: 3874-4105 bp Feature: domain Description: GIIM Note: maturase Location: 3874-41 05 bp Feature: gene Location: 4727-5416 bp Feature: domain Description: COG4584 Location: 4730-5297 bp Feature: domain Description: COG4584 Location: 4730-5297 bp Feature: gene Location: 5598-5987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JJOS01000002.1 Methanosarcina mazei strain 2.F.A.2.4 scaffold1_1_size165191-refined, whole genome shotgun sequence (165036 bp)
Overview 1 RT 1: 51724-62156 bp Neighborhood of RT #1 [51724, 62164] RVT_N RVT-GII GIIM TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR CHAT Feature: gene Location: 51724-51942 bp Feature: gene Location: 53914-54156 bp Feature: gene Location: 54811-56289 bp Feature: RT Description: RVT_N Location: 54901-55141 bp Feature: RT Description: RVT_N Location: 54901-55141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55189-55825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55189-5582 5 bp Feature: domain Description: GIIM Note: maturase Location: 55876-56110 bp Feature: domain Description: GIIM Note: maturase Location: 55876-56110 bp Feature: gene Location: 57347-57664 bp Feature: gene Location: 58604-62164 bp Feature: domain Description: TPR_10 Location: 58715-58802 bp Feature: domain Description: TPR_10 Location: 58715-58802 bp Feature: domain Description: TPR_10 Location: 58988-59096 bp Feature: domain Description: TPR_10 Location: 58988-59096 bp Feature: domain Description: TPR_10 Location: 59228-59333 bp Feature: domain Description: TPR_10 Location: 592 2 8-59333 bp Feature: domain Description: TPR_10 Location: 59378-59489 bp Feature: domain Description: TPR_10 Location: 59378-59489 bp Feature: domain Description: TPR_10 Location: 59519-59633 bp Feature: domain Description: TPR_10 Location: 59519-59633 bp Feature: domain Description: TPR_10 Location: 59675-59777 bp Feature: domain Description: TPR_10 Location: 59675-59777 bp Feature: domain Description: TPR_10 Location: 59807-59918 bp Feature: domain Description: TPR_10 Location: 59807-59918 bp Feature: domain Description: TPR_10 Location: 59948-60056 bp Feature: domain Description: TPR_10 Location: 59948-60056 bp Feature: domain Description: TPR_10 Location: 60098-60206 bp Feature: domain Description: TPR_10 Location: 60098-602 06 bp Feature: domain Description: TPR_10 Location: 60242-60353 bp Feature: domain Description: TPR_10 Location: 602 42 -60353 bp Feature: domain Description: TPR_10 Location: 60380-60497 bp Feature: domain Description: TPR_10 Location: 60380-60497 bp Feature: domain Description: TPR Location: 60533-60797 bp Feature: domain Description: TPR Location: 60533-60797 bp Feature: domain Description: CHAT Location: 61361-62156 bp Feature: domain Description: CHAT Location: 61361-62 156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TPR_10 (pfam13374), TPR (smart00028), CHAT (pfam12770)