myRT

myRT report for GCA_000979375.1_gtlEnvA5udCFS

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Seq: JJOT01000062.1 Methanosarcina mazei strain 2.F.T.0.2 scaffold5_1_size88936-refined, whole genome shotgun sequence (88732 bp)
Overview 1 RT 1: 23633-31660 bp Neighborhood of RT #1 [23633, 31680] DDE_Tnp_1_2 Type_II_cohesin Big_9 Big_9 Dockerin_II RVT-GII GIIM HNHc MATE_Wzx_like LbH_MAT_like Feature: gene Location: 23633-23905 bp Ori: KKG02316.1 Feature: domain Description: DDE_Tnp_1_2 Location: 23639-23885 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 23639-23885 bp Feature: gene Location: 24838-27465 bp Ori: KKG02317.1 Feature: domain Description: Type_II_cohesin Location: 26350-26713 bp Feature: domain Description: Type_II_cohesin Location: 26350-2671 3 bp Feature: domain Description: Big_9 Location: 26719-26971 bp Feature: domain Description: Big_9 Location: 2671 9-26971 bp Feature: domain Description: Big_9 Location: 26989-27235 bp Feature: domain Description: Big_9 Location: 26989-27235 bp Feature: domain Description: Dockerin_II Location: 27295-27451 bp Feature: domain Description: Dockerin_II Location: 27295-27451 bp Feature: gene Location: 28421-29239 bp Ori: KKG02318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28454-28598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28454-28598 bp Feature: domain Description: GIIM Note: maturase Location: 28658-28883 bp Feature: domain Description: GIIM Note: maturase Location: 28658-28883 bp Feature: domain Description: HNHc Note: nucleases Location: 29069-29228 bp Feature: domain Description: HNHc Note: nucleases Location: 29069-29228 bp Feature: gene Location: 29677-31146 bp Ori: KKG02319.1 Feature: domain Description: MATE_Wzx_like Location: 29698-30880 bp Feature: domain Description: MATE_Wzx_like Location: 29698-30880 bp Feature: gene Location: 31174-31680 bp Ori: KKG02320.1 Feature: domain Description: LbH_MAT_like Location: 31333-31660 bp Feature: domain Description: LbH_MAT_like Location: 31 333-31 660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_2 (pfam13586), Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254), RVT-GII, GIIM (pfam08388), HNHc (smart00507), MATE_Wzx_like (cd13128), LbH_MAT_like (cd04647)

Seq: JJOT01000131.1 Methanosarcina mazei strain 2.F.T.0.2 scaffold57_1_size22668-refined, whole genome shotgun sequence (22468 bp)
Overview 1 RT 1: 3555-8106 bp Neighborhood of RT #1 [3555, 8234] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 3555-3899 bp Feature: gene Location: 5080-6204 bp Ori: KKF98114.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5260-5884 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 52 60-5884 bp Feature: gene Location: 6326-7000 bp Ori: KKF98115.1 Feature: domain Description: Cas6b_N Location: 6347-6647 bp Feature: domain Description: Cas6b_N Location: 6347-6647 bp Feature: domain Description: Cas6b_C Location: 6659-6992 bp Feature: domain Description: Cas6b_C Location: 6659-6992 bp Feature: gene Location: 7041-8234 bp Ori: KKF98116.1 Feature: domain Description: DUF1887 Location: 7185-7407 bp Feature: domain Description: DUF1887 Location: 7185-7407 bp Feature: domain Description: DUF1887 Location: 7806-8106 bp Feature: domain Description: DUF1887 Location: 7806-8106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)