myRT

myRT report for GCA_000979495.1_gtlEnvA5udCFS

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Seq: JJPA01000140.1 Methanosarcina mazei strain 3.F.A.1A.1 scaffold44_1_size25940-refined, whole genome shotgun sequence (25940 bp)
Overview 1 RT 1: 15453-18201 bp Neighborhood of RT #1 [15453, 18254] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 15453-16577 bp Ori: KKG32024.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15633-16257 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 5633-1 6257 bp Feature: gene Location: 16714-17373 bp Ori: KKG32025.1 Feature: domain Description: Cas6b_N Location: 16720-17020 bp Feature: domain Description: Cas6b_N Location: 1 6720-1 7020 bp Feature: domain Description: Cas6b_C Location: 17032-17365 bp Feature: domain Description: Cas6b_C Location: 1 7032-1 7365 bp Feature: gene Location: 17421-18254 bp Ori: KKG32026.1 Feature: domain Description: Cmr1 Location: 17430-17664 bp Feature: domain Description: Cmr1 Location: 1 7430-1 7664 bp Feature: domain Description: Cmr1 Location: 18099-18201 bp Feature: domain Description: Cmr1 Location: 1 8099-1 8201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)

Seq: JJPA01000210.1 Methanosarcina mazei strain 3.F.A.1A.1 scaffold210_1_size2445-refined, whole genome shotgun sequence (2245 bp)
Overview 1 RT 1: 52-2126 bp Neighborhood of RT #1 [52, 2245] RVT_N RVT-GII GIIM COG4584 Feature: gene Location: 52-1551 bp Ori: KKG28198.1 Feature: domain Description: RVT_N Location: 121-364 bp Feature: domain Description: RVT_N Location: 12 1-364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1066 bp Feature: domain Description: GIIM Note: maturase Location: 1120-1351 bp Feature: domain Description: GIIM Note: maturase Location: 112 0-1351 bp Feature: gene Location: 1973-2245 bp Ori: KKG28199.1 Feature: domain Description: COG4584 Location: 1976-2126 bp Feature: domain Description: COG4584 Location: 1976-2 12 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase )