myRT

myRT report for GCA_000979515.1_gtlEnvA5udCFS

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Seq: JJPD01000037.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold62_1_size23258-refined, whole genome shotgun sequence (23058 bp)
Overview 1 RT 1: 9271-12019 bp Neighborhood of RT #1 [9271, 12072] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 9271-10395 bp Ori: KKG44331.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 9451-10075 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 9451 -1 0075 bp Feature: gene Location: 10532-11191 bp Ori: KKG44332.1 Feature: domain Description: Cas6b_N Location: 10538-10838 bp Feature: domain Description: Cas6b_N Location: 1 0538-1 0838 bp Feature: domain Description: Cas6b_C Location: 10850-11183 bp Feature: domain Description: Cas6b_C Location: 1 0850-1 1 1 83 bp Feature: gene Location: 11239-12072 bp Ori: KKG44333.1 Feature: domain Description: Cmr1 Location: 11248-11482 bp Feature: domain Description: Cmr1 Location: 1 1 248-1 1 482 bp Feature: domain Description: Cmr1 Location: 11917-12019 bp Feature: domain Description: Cmr1 Location: 1 1 91 7-1 201 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)

Seq: JJPD01000154.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold19_1_size44125-refined, whole genome shotgun sequence (44125 bp)
Overview 1 RT 1: 12461-21238 bp Neighborhood of RT #1 [12461, 21243] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12461-12853 bp Ori: KKG38407.1 Feature: domain Description: YkvA Location: 12560-12848 bp Feature: domain Description: YkvA Location: 12 560-12 848 bp Feature: gene Location: 13471-13767 bp Ori: KKG38408.1 Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: gene Location: 14762-16444 bp Ori: KKG38409.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002 -15542 bp Feature: gene Location: 16460-19354 bp Ori: KKG38410.1 Feature: domain Description: Lhr Location: 16475-18986 bp Feature: domain Description: Lhr Location: 16475-18986 bp Feature: gene Location: 19708-21243 bp Ori: KKG38411.1 Feature: domain Description: lysS Location: 19801-21238 bp Feature: domain Description: lysS Location: 19801-2 12 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPD01000085.1 Methanosarcina mazei strain 3.F.A.2.12 scaffold158_1_size4580-refined, whole genome shotgun sequence (4283 bp)
Overview 1 RT 1: 504-4279 bp Neighborhood of RT #1 [504, 4283] COG4584 RVT_N RVT-GII GIIM COG4584 DnaC Feature: gene Location: 504-1193 bp Ori: KKG42037.1 Feature: domain Description: COG4584 Location: 507-1074 bp Feature: domain Description: COG4584 Location: 507-1074 bp Feature: gene Location: 1621-3120 bp Ori: KKG42038.1 Feature: domain Description: RVT_N Location: 1690-1933 bp Feature: domain Description: RVT_N Location: 1690-193 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1978-2635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1978-263 5 bp Feature: domain Description: GIIM Note: maturase Location: 2689-2920 bp Feature: domain Description: GIIM Note: maturase Location: 2689-2920 bp Feature: gene Location: 3152-3901 bp Ori: KKG42039.1 Feature: domain Description: COG4584 Location: 3221-3503 bp Feature: domain Description: COG4584 Location: 3 221-3 503 bp Feature: gene Location: 3898-4283 bp Ori: KKG42040.1 Feature: domain Description: DnaC Location: 3901-4279 bp Feature: domain Description: DnaC Location: 3 901-4279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DnaC (COG1484)