myRT

myRT report for GCA_000979555.1_gtlEnvA5udCFS

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Seq: JJPE01000019.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold145_1_size4853-refined, whole genome shotgun sequence (4652 bp)
Overview 1 RT 1: 348-2230 bp Neighborhood of RT #1 [348, 2628] RVT_N RVT-GII GIIM COG4584 Feature: gene Location: 348-1847 bp Ori: KKG47698.1 Feature: domain Description: RVT_N Location: 417-660 bp Feature: domain Description: RVT_N Location: 41 7-660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1 362 bp Feature: domain Description: GIIM Note: maturase Location: 1416-1647 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 6-1 647 bp Feature: gene Location: 1879-2628 bp Ori: KKG47699.1 Feature: domain Description: COG4584 Location: 1948-2230 bp Feature: domain Description: COG4584 Location: 1 948-2230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase )

Seq: JJPE01000076.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold24_1_size44125-refined, whole genome shotgun sequence (44125 bp)
Overview 1 RT 1: 12461-21238 bp Neighborhood of RT #1 [12461, 21243] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12461-12853 bp Ori: KKG44230.1 Feature: domain Description: YkvA Location: 12560-12848 bp Feature: domain Description: YkvA Location: 12 560-12 848 bp Feature: gene Location: 13471-13767 bp Ori: KKG44231.1 Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: gene Location: 14762-16444 bp Ori: KKG44232.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002 -15542 bp Feature: gene Location: 16460-19354 bp Ori: KKG44233.1 Feature: domain Description: Lhr Location: 16475-18986 bp Feature: domain Description: Lhr Location: 16475-18986 bp Feature: gene Location: 19708-21243 bp Ori: KKG44234.1 Feature: domain Description: lysS Location: 19801-21238 bp Feature: domain Description: lysS Location: 19801-2 12 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPE01000028.1 Methanosarcina mazei strain 3.F.A.2.3 scaffold10_1_size77834-refined, whole genome shotgun sequence (77486 bp)
Overview 1 RT 1: 3724-6205 bp Neighborhood of RT #1 [3724, 6525] Cmr1 Cmr1 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 3724-4557 bp Ori: KKG47305.1 Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 3 73 3 -3 967 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: gene Location: 4605-5264 bp Ori: KKG47306.1 Feature: domain Description: Cas6b_N Location: 4611-4911 bp Feature: domain Description: Cas6b_N Location: 4611-4911 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: domain Description: Cas6b_C Location: 4923 -5256 bp Feature: gene Location: 5401-6525 bp Ori: KKG47307.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581-6205 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581-6205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr1 (COG1367), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR