myRT

myRT report for GCA_000979575.1_gtlEnvA5udCFS

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Seq: JJPG01000078.1 Methanosarcina mazei strain 3.F.A.2.6 scaffold23_1_size44131-refined, whole genome shotgun sequence (44131 bp)
Overview 1 RT 1: 12461-21238 bp Neighborhood of RT #1 [12461, 21243] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12461-12853 bp Ori: KKG52243.1 Feature: domain Description: YkvA Location: 12560-12848 bp Feature: domain Description: YkvA Location: 1 2560-1 2848 bp Feature: gene Location: 13471-13767 bp Ori: KKG52244.1 Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: domain Description: COG1 669 Location: 1 3474-1 3756 bp Feature: gene Location: 14762-16444 bp Ori: KKG52245.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5002-1 5542 bp Feature: gene Location: 16460-19354 bp Ori: KKG52246.1 Feature: domain Description: Lhr Location: 16475-18986 bp Feature: domain Description: Lhr Location: 1 6475-1 8986 bp Feature: gene Location: 19708-21243 bp Ori: KKG52247.1 Feature: domain Description: lysS Location: 19801-21238 bp Feature: domain Description: lysS Location: 1 9801 -21 238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPG01000158.1 Methanosarcina mazei strain 3.F.A.2.6 scaffold19_1_size107280-refined, whole genome shotgun sequence (106218 bp)
Overview 1 RT 1: 79989-84752 bp Neighborhood of RT #1 [79989, 84752] DnaC COG4584 RVT_N RVT-GII GIIM COG4584 Feature: gene Location: 79989-80786 bp Ori: KKG47170.1 Feature: domain Description: DnaC Location: 79992-80736 bp Feature: domain Description: DnaC Location: 79992 -80736 bp Feature: gene Location: 80783-81532 bp Ori: KKG47171.1 Feature: domain Description: COG4584 Location: 80852-81134 bp Feature: domain Description: COG4584 Location: 80852 -81134 bp Feature: gene Location: 81564-83063 bp Ori: KKG47172.1 Feature: domain Description: RVT_N Location: 81633-81876 bp Feature: domain Description: RVT_N Location: 81633-81876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81921-82578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8192 1-82 578 bp Feature: domain Description: GIIM Note: maturase Location: 82632-82863 bp Feature: domain Description: GIIM Note: maturase Location: 82 632 -82 863 bp Feature: gene Location: 83492-84181 bp Ori: KKG47173.1 Feature: domain Description: COG4584 Location: 83495-84062 bp Feature: domain Description: COG4584 Location: 83495-84062 bp Feature: gene Location: 84363-84752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaC (COG1484), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JJPG01000092.1 Methanosarcina mazei strain 3.F.A.2.6 scaffold9_1_size151753-refined, whole genome shotgun sequence (151241 bp)
Overview 1 RT 1: 3724-6205 bp Neighborhood of RT #1 [3724, 6525] Cmr1 Cmr1 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 3724-4557 bp Ori: KKG51340.1 Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 3 73 3 -3 967 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: gene Location: 4605-5264 bp Ori: KKG51341.1 Feature: domain Description: Cas6b_N Location: 4611-4911 bp Feature: domain Description: Cas6b_N Location: 4611-4911 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: domain Description: Cas6b_C Location: 4923 -5256 bp Feature: gene Location: 5401-6525 bp Ori: KKG51342.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581-6205 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581-6205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr1 (COG1367), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR