myRT

myRT report for GCA_000979585.1_gtlEnvA5udCFS

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Seq: JJPH01000124.1 Methanosarcina mazei strain 3.F.A.2.7 scaffold9_1_size77455-refined, whole genome shotgun sequence (77261 bp)
Overview 1 RT 1: 3724-6205 bp Neighborhood of RT #1 [3724, 6525] Cmr1 Cmr1 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 3724-4557 bp Ori: KKG48644.1 Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 3733-3967 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: domain Description: Cmr1 Location: 4402-4504 bp Feature: gene Location: 4605-5264 bp Ori: KKG48645.1 Feature: domain Description: Cas6b_N Location: 4611-4911 bp Feature: domain Description: Cas6b_N Location: 461 1 -491 1 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: domain Description: Cas6b_C Location: 4923-5256 bp Feature: gene Location: 5401-6525 bp Ori: KKG48646.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581-6205 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5581 -6205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr1 (COG1367), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR

Seq: JJPH01000050.1 Methanosarcina mazei strain 3.F.A.2.7 scaffold29_1_size44126-refined, whole genome shotgun sequence (44126 bp)
Overview 1 RT 1: 12461-21238 bp Neighborhood of RT #1 [12461, 21243] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12461-12853 bp Ori: KKG53575.1 Feature: domain Description: YkvA Location: 12560-12848 bp Feature: domain Description: YkvA Location: 12 560-12 848 bp Feature: gene Location: 13471-13767 bp Ori: KKG53576.1 Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: domain Description: COG1669 Location: 13474-13756 bp Feature: gene Location: 14762-16444 bp Ori: KKG53577.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002-15542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15002 -15542 bp Feature: gene Location: 16460-19354 bp Ori: KKG53578.1 Feature: domain Description: Lhr Location: 16475-18986 bp Feature: domain Description: Lhr Location: 16475-18986 bp Feature: gene Location: 19708-21243 bp Ori: KKG53579.1 Feature: domain Description: lysS Location: 19801-21238 bp Feature: domain Description: lysS Location: 19801-2 12 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPH01000034.1 Methanosarcina mazei strain 3.F.A.2.7 scaffold46_1_size32281-refined, whole genome shotgun sequence (31683 bp)
Overview 1 RT 1: 2023-6046 bp Neighborhood of RT #1 [2023, 6099] COG4584 RVT_N RVT-GII GIIM COG4584 DUF2683 Feature: gene Location: 2023-2772 bp Ori: KKG54702.1 Feature: domain Description: COG4584 Location: 2092-2374 bp Feature: domain Description: COG4584 Location: 2092-23 74 bp Feature: gene Location: 2804-4303 bp Ori: KKG54703.1 Feature: domain Description: RVT_N Location: 2873-3116 bp Feature: domain Description: RVT_N Location: 2873 -3 116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3161-3818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 161-3 818 bp Feature: domain Description: GIIM Note: maturase Location: 3872-4103 bp Feature: domain Description: GIIM Note: maturase Location: 3 872-4103 bp Feature: gene Location: 4732-5421 bp Ori: KKG54704.1 Feature: domain Description: COG4584 Location: 4735-5302 bp Feature: domain Description: COG4584 Location: 473 5-53 02 bp Feature: gene Location: 5818-6099 bp Ori: KKG54705.1 Feature: domain Description: DUF2683 Location: 5833-6046 bp Feature: domain Description: DUF2683 Location: 583 3 -6046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF2683 (pfam10884)