myRT

myRT report for GCA_000979595.1_gtlEnvA5udCFS

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Seq: JJPJ01000094.1 Methanosarcina mazei strain 3.F.T.1A.2 scaffold58_1_size30836-refined, whole genome shotgun sequence (30568 bp)
Overview 1 RT 1: 6478-11109 bp Neighborhood of RT #1 [6478, 11114] DnaC COG4584 RVT_N RVT-GII GIIM COG4584 HicB Feature: gene Location: 6478-7275 bp Ori: KKG60873.1 Feature: domain Description: DnaC Location: 6481-7225 bp Feature: domain Description: DnaC Location: 6481 -7225 bp Feature: gene Location: 7272-8021 bp Ori: KKG60874.1 Feature: domain Description: COG4584 Location: 7341-7623 bp Feature: domain Description: COG4584 Location: 7341 -7623 bp Feature: gene Location: 8053-9552 bp Ori: KKG60875.1 Feature: domain Description: RVT_N Location: 8122-8365 bp Feature: domain Description: RVT_N Location: 81 22-8365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8410-9067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 0-9067 bp Feature: domain Description: GIIM Note: maturase Location: 9121-9352 bp Feature: domain Description: GIIM Note: maturase Location: 91 21 -9352 bp Feature: gene Location: 9974-10663 bp Ori: KKG60876.1 Feature: domain Description: COG4584 Location: 9977-10544 bp Feature: domain Description: COG4584 Location: 9977-1 0544 bp Feature: gene Location: 10884-11114 bp Ori: KKG60877.1 Feature: domain Description: HicB Location: 10941-11109 bp Feature: domain Description: HicB Location: 1 0941 -1 1 1 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaC (COG1484), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HicB (pfam05534)

Seq: JJPJ01000117.1 Methanosarcina mazei strain 3.F.T.1A.2 scaffold29_1_size39118-refined, whole genome shotgun sequence (39118 bp)
Overview 1 RT 1: 31881-38175 bp Neighborhood of RT #1 [31881, 38189] MATE_Wzx_like GIIM HNHc RVT-GII Type_II_cohesin Big_9 Big_9 Dockerin_II Feature: gene Location: 31881-33350 bp Ori: KKG59651.1 Feature: domain Description: MATE_Wzx_like Location: 31902-33084 bp Feature: domain Description: MATE_Wzx_like Location: 31902 -33084 bp Feature: gene Location: 33788-34315 bp Ori: KKG59652.1 Feature: domain Description: GIIM Note: maturase Location: 33791-33959 bp Feature: domain Description: GIIM Note: maturase Location: 33791-33959 bp Feature: domain Description: HNHc Note: nucleases Location: 34145-34304 bp Feature: domain Description: HNHc Note: nucleases Location: 34145-34304 bp Feature: gene Location: 34328-34606 bp Ori: KKG59653.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34361-34505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34361-34505 bp Feature: gene Location: 35562-38189 bp Ori: KKG59654.1 Feature: domain Description: Type_II_cohesin Location: 37074-37437 bp Feature: domain Description: Type_II_cohesin Location: 37074-37437 bp Feature: domain Description: Big_9 Location: 37443-37695 bp Feature: domain Description: Big_9 Location: 37443-37695 bp Feature: domain Description: Big_9 Location: 37713-37959 bp Feature: domain Description: Big_9 Location: 37713-37959 bp Feature: domain Description: Dockerin_II Location: 38019-38175 bp Feature: domain Description: Dockerin_II Location: 38019-38175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_Wzx_like (cd13128), GIIM (pfam08388), HNHc (smart00507), RVT-GII, Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254)

Seq: JJPJ01000043.1 Methanosarcina mazei strain 3.F.T.1A.2 scaffold70_1_size19434-refined, whole genome shotgun sequence (19434 bp)
Overview 1 RT 1: 746-4818 bp Neighborhood of RT #1 [746, 4818] RVT_N RVT-GII GIIM Feature: gene Location: 746-1063 bp Feature: gene Location: 2119-3597 bp Ori: KKG64018.1 Feature: domain Description: RVT_N Location: 2209-2449 bp Feature: domain Description: RVT_N Location: 2209-2449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2497-3133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2497-3 13 3 bp Feature: domain Description: GIIM Note: maturase Location: 3184-3418 bp Feature: domain Description: GIIM Note: maturase Location: 3 184-3 418 bp Feature: gene Location: 4252-4494 bp Feature: gene Location: 4624-4818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JJPJ01000080.1 Methanosarcina mazei strain 3.F.T.1A.2 scaffold34_1_size57318-refined, whole genome shotgun sequence (57041 bp)
Overview 1 RT 1: 14212-17046 bp Neighborhood of RT #1 [14212, 17366] DUF1887 DUF1887 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 14212-15405 bp Ori: KKG61569.1 Feature: domain Description: DUF1887 Location: 14356-14578 bp Feature: domain Description: DUF1887 Location: 14 356-14 578 bp Feature: domain Description: DUF1887 Location: 14977-15277 bp Feature: domain Description: DUF1887 Location: 14 977-15277 bp Feature: gene Location: 15446-16120 bp Ori: KKG61570.1 Feature: domain Description: Cas6b_N Location: 15467-15767 bp Feature: domain Description: Cas6b_N Location: 154 67-15767 bp Feature: domain Description: Cas6b_C Location: 15779-16112 bp Feature: domain Description: Cas6b_C Location: 15779-16112 bp Feature: gene Location: 16242-17366 bp Ori: KKG61571.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 16422-17046 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 164 22-1704 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1887 (pfam09002), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR