myRT

myRT report for GCA_000979635.1_gtlEnvA5udCFS

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Seq: JJPK01000075.1 Methanosarcina mazei strain 3.F.T.1A.4 scaffold67_1_size19467-refined, whole genome shotgun sequence (19467 bp)
Overview 1 RT 1: 746-4825 bp Neighborhood of RT #1 [746, 4825] RVT_N RVT-GII GIIM Feature: gene Location: 746-1063 bp Feature: gene Location: 2126-3604 bp Ori: KKG60891.1 Feature: domain Description: RVT_N Location: 2216-2456 bp Feature: domain Description: RVT_N Location: 221 6-2456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504-3140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504-31 40 bp Feature: domain Description: GIIM Note: maturase Location: 3191-3425 bp Feature: domain Description: GIIM Note: maturase Location: 31 91 -3425 bp Feature: gene Location: 4259-4501 bp Feature: gene Location: 4631-4825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JJPK01000046.1 Methanosarcina mazei strain 3.F.T.1A.4 scaffold6_1_size162937-refined, whole genome shotgun sequence (162276 bp)
Overview 1 RT 1: 89064-91898 bp 2 RT 2: 138186-142817 bp Neighborhood of RT #1 [89064, 92218] DUF1887 DUF1887 Cas6b_N Cas6b_C RVT-CRISPR Neighborhood of RT #2 [138186, 142822] DnaC COG4584 RVT_N RVT-GII GIIM COG4584 HicB Feature: gene Location: 89064-90257 bp Ori: KKG62883.1 Feature: domain Description: DUF1887 Location: 89208-89430 bp Feature: domain Description: DUF1887 Location: 892 08-89430 bp Feature: domain Description: DUF1887 Location: 89829-90129 bp Feature: domain Description: DUF1887 Location: 8982 9-9012 9 bp Feature: gene Location: 90298-90972 bp Ori: KKG62884.1 Feature: domain Description: Cas6b_N Location: 90319-90619 bp Feature: domain Description: Cas6b_N Location: 90319-90619 bp Feature: domain Description: Cas6b_C Location: 90631-90964 bp Feature: domain Description: Cas6b_C Location: 90631-90964 bp Feature: gene Location: 91094-92218 bp Ori: KKG62885.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 91274-91898 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 912 74-91898 bp Feature: gene Location: 138186-138983 bp Ori: KKG62923.1 Feature: domain Description: DnaC Location: 138189-138933 bp Feature: domain Description: DnaC Location: 138189-138933 bp Feature: gene Location: 138980-139729 bp Ori: KKG62924.1 Feature: domain Description: COG4584 Location: 139049-139331 bp Feature: domain Description: COG4584 Location: 139049-139331 bp Feature: gene Location: 139761-141260 bp Ori: KKG62925.1 Feature: domain Description: RVT_N Location: 139830-140073 bp Feature: domain Description: RVT_N Location: 139830-140073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140118-140775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140118-140775 bp Feature: domain Description: GIIM Note: maturase Location: 140829-141060 bp Feature: domain Description: GIIM Note: maturase Location: 14082 9-141060 bp Feature: gene Location: 141682-142371 bp Ori: KKG62926.1 Feature: domain Description: COG4584 Location: 141685-142252 bp Feature: domain Description: COG4584 Location: 141685-142 2 52 bp Feature: gene Location: 142592-142822 bp Ori: KKG62927.1 Feature: domain Description: HicB Location: 142649-142817 bp Feature: domain Description: HicB Location: 142 649-142 817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1887 (pfam09002), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR, DnaC (COG1484), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HicB (pfam05534)

Seq: JJPK01000031.1 Methanosarcina mazei strain 3.F.T.1A.4 scaffold33_1_size39184-refined, whole genome shotgun sequence (39184 bp)
Overview 1 RT 1: 31943-38237 bp Neighborhood of RT #1 [31943, 38251] MATE_Wzx_like GIIM HNHc RVT-GII Type_II_cohesin Big_9 Big_9 Dockerin_II Feature: gene Location: 31943-33412 bp Ori: KKG63757.1 Feature: domain Description: MATE_Wzx_like Location: 31964-33146 bp Feature: domain Description: MATE_Wzx_like Location: 3 1964-3 3 146 bp Feature: gene Location: 33850-34377 bp Ori: KKG63758.1 Feature: domain Description: GIIM Note: maturase Location: 33853-34021 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 853 -3 4021 bp Feature: domain Description: HNHc Note: nucleases Location: 34207-34366 bp Feature: domain Description: HNHc Note: nucleases Location: 3 4207-3 43 66 bp Feature: gene Location: 34390-34668 bp Ori: KKG63759.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34423-34567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4423 -3 4567 bp Feature: gene Location: 35624-38251 bp Ori: KKG63760.1 Feature: domain Description: Type_II_cohesin Location: 37136-37499 bp Feature: domain Description: Type_II_cohesin Location: 3 713 6-3 7499 bp Feature: domain Description: Big_9 Location: 37505-37757 bp Feature: domain Description: Big_9 Location: 3 7505-3 7757 bp Feature: domain Description: Big_9 Location: 37775-38021 bp Feature: domain Description: Big_9 Location: 3 7775-3 8021 bp Feature: domain Description: Dockerin_II Location: 38081-38237 bp Feature: domain Description: Dockerin_II Location: 3 8081-3 823 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_Wzx_like (cd13128), GIIM (pfam08388), HNHc (smart00507), RVT-GII, Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254)