myRT

myRT report for GCA_000979675.1_gtlEnvA5udCFS

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Seq: JJPN01000134.1 Methanosarcina mazei strain 3.H.A.1A.2 scaffold21_1_size44112-refined, whole genome shotgun sequence (44112 bp)
Overview 1 RT 1: 12443-21220 bp Neighborhood of RT #1 [12443, 21225] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12443-12835 bp Ori: KKG69353.1 Feature: domain Description: YkvA Location: 12542-12830 bp Feature: domain Description: YkvA Location: 1 2542-1 2830 bp Feature: gene Location: 13453-13749 bp Ori: KKG69354.1 Feature: domain Description: COG1669 Location: 13456-13738 bp Feature: domain Description: COG1 669 Location: 1 3456-1 3738 bp Feature: gene Location: 14744-16426 bp Ori: KKG69355.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14984-15524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4984-1 5524 bp Feature: gene Location: 16442-19336 bp Ori: KKG69356.1 Feature: domain Description: Lhr Location: 16457-18968 bp Feature: domain Description: Lhr Location: 1 6457-1 8968 bp Feature: gene Location: 19690-21225 bp Ori: KKG69357.1 Feature: domain Description: lysS Location: 19783-21220 bp Feature: domain Description: lysS Location: 1 9783-21 220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPN01000180.1 Methanosarcina mazei strain 3.H.A.1A.2 scaffold18_1_size83354-refined, whole genome shotgun sequence (82879 bp)
Overview 1 RT 1: 361-5731 bp Neighborhood of RT #1 [361, 5934] RVT_N RVT-GII GIIM Pentapeptide Pentapeptide Pentapeptide Pentapeptide Pentapeptide Pentapeptide Pentapeptide Feature: gene Location: 361-600 bp Feature: gene Location: 604-801 bp Feature: gene Location: 1142-2641 bp Ori: KKG67384.1 Feature: domain Description: RVT_N Location: 1211-1454 bp Feature: domain Description: RVT_N Location: 12 11-1454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-2156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-2 156 bp Feature: domain Description: GIIM Note: maturase Location: 2210-2441 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 10-2 441 bp Feature: gene Location: 3901-4290 bp Feature: gene Location: 4816-5934 bp Ori: KKG67386.1 Feature: domain Description: Pentapeptide Location: 4840-4948 bp Feature: domain Description: Pentapeptide Location: 4840-4948 bp Feature: domain Description: Pentapeptide Location: 4957-5068 bp Feature: domain Description: Pentapeptide Location: 4957-5068 bp Feature: domain Description: Pentapeptide Location: 5077-5188 bp Feature: domain Description: Pentapeptide Location: 5077-5188 bp Feature: domain Description: Pentapeptide Location: 5197-5314 bp Feature: domain Description: Pentapeptide Location: 5197-5314 bp Feature: domain Description: Pentapeptide Location: 5380-5491 bp Feature: domain Description: Pentapeptide Location: 5380-5491 bp Feature: domain Description: Pentapeptide Location: 5497-5611 bp Feature: domain Description: Pentapeptide Location: 5497-5611 bp Feature: domain Description: Pentapeptide Location: 5623-5731 bp Feature: domain Description: Pentapeptide Location: 562 3-5731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Pentapeptide (pfam00805)

Seq: JJPN01000055.1 Methanosarcina mazei strain 3.H.A.1A.2 scaffold2_1_size93826-refined, whole genome shotgun sequence (93607 bp)
Overview 1 RT 1: 68960-71708 bp Neighborhood of RT #1 [68960, 71761] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 68960-70084 bp Ori: KKG73213.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 69140-69764 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 69140-69764 bp Feature: gene Location: 70221-70880 bp Ori: KKG73214.1 Feature: domain Description: Cas6b_N Location: 70227-70527 bp Feature: domain Description: Cas6b_N Location: 70227-70527 bp Feature: domain Description: Cas6b_C Location: 70539-70872 bp Feature: domain Description: Cas6b_C Location: 7053 9-70872 bp Feature: gene Location: 70928-71761 bp Ori: KKG73215.1 Feature: domain Description: Cmr1 Location: 70937-71171 bp Feature: domain Description: Cmr1 Location: 7093 7-71171 bp Feature: domain Description: Cmr1 Location: 71606-71708 bp Feature: domain Description: Cmr1 Location: 71606-71708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)