myRT

myRT report for GCA_000979685.1_gtlEnvA5udCFS

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Seq: JJPP01000082.1 Methanosarcina mazei strain 3.H.A.2.4 scaffold43_1_size63184-refined, whole genome shotgun sequence (62984 bp)
Overview 1 RT 1: 1-4272 bp Neighborhood of RT #1 [1, 4277] DnaC RVT_N RVT-GII GIIM COG4584 HicB Feature: gene Location: 1-438 bp Ori: KKG79511.1 Feature: domain Description: DnaC Location: 4-439 bp Feature: domain Description: DnaC Location: 4-439 bp Feature: gene Location: 1216-2715 bp Ori: KKG79512.1 Feature: domain Description: RVT_N Location: 1285-1528 bp Feature: domain Description: RVT_N Location: 1 285-1 528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1573-2230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 573-2230 bp Feature: domain Description: GIIM Note: maturase Location: 2284-2515 bp Feature: domain Description: GIIM Note: maturase Location: 2284-251 5 bp Feature: gene Location: 3137-3826 bp Ori: KKG79513.1 Feature: domain Description: COG4584 Location: 3140-3707 bp Feature: domain Description: COG4584 Location: 31 40-3707 bp Feature: gene Location: 4047-4277 bp Ori: KKG79514.1 Feature: domain Description: HicB Location: 4104-4272 bp Feature: domain Description: HicB Location: 41 04-4272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaC (COG1484), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), HicB (pfam05534)

Seq: JJPP01000017.1 Methanosarcina mazei strain 3.H.A.2.4 scaffold36_1_size53364-refined, whole genome shotgun sequence (53164 bp)
Overview 1 RT 1: 26979-30005 bp Neighborhood of RT #1 [26979, 30133] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 26979-28103 bp Ori: KKG83406.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 27159-27783 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 7159-2 7783 bp Feature: gene Location: 28225-28899 bp Ori: KKG83407.1 Feature: domain Description: Cas6b_N Location: 28246-28546 bp Feature: domain Description: Cas6b_N Location: 2 82 46-2 8546 bp Feature: domain Description: Cas6b_C Location: 28558-28891 bp Feature: domain Description: Cas6b_C Location: 2 8558-2 8891 bp Feature: gene Location: 28940-30133 bp Ori: KKG83408.1 Feature: domain Description: DUF1887 Location: 29084-29306 bp Feature: domain Description: DUF1887 Location: 2 9084-2 9306 bp Feature: domain Description: DUF1887 Location: 29705-30005 bp Feature: domain Description: DUF1887 Location: 2 9705-30005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)

Seq: JJPP01000050.1 Methanosarcina mazei strain 3.H.A.2.4 scaffold34_1_size40523-refined, whole genome shotgun sequence (40523 bp)
Overview 1 RT 1: 18357-25907 bp Neighborhood of RT #1 [18357, 25927] Type_II_cohesin Type_II_cohesin Big_9 Big_9 Dockerin_II RVT-GII GIIM HNHc MATE_Wzx_like LbH_MAT_like Feature: gene Location: 18357-18899 bp Ori: KKG81090.1 Feature: domain Description: Type_II_cohesin Location: 18438-18849 bp Feature: domain Description: Type_II_cohesin Location: 1843 8-18849 bp Feature: gene Location: 19085-21712 bp Ori: KKG81091.1 Feature: domain Description: Type_II_cohesin Location: 20597-20960 bp Feature: domain Description: Type_II_cohesin Location: 20597-20960 bp Feature: domain Description: Big_9 Location: 20966-21218 bp Feature: domain Description: Big_9 Location: 20966-21218 bp Feature: domain Description: Big_9 Location: 21236-21482 bp Feature: domain Description: Big_9 Location: 2123 6-21482 bp Feature: domain Description: Dockerin_II Location: 21542-21698 bp Feature: domain Description: Dockerin_II Location: 21542-21698 bp Feature: gene Location: 22668-23486 bp Ori: KKG81092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22701-22845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22701-22845 bp Feature: domain Description: GIIM Note: maturase Location: 22905-23130 bp Feature: domain Description: GIIM Note: maturase Location: 22905-23 13 0 bp Feature: domain Description: HNHc Note: nucleases Location: 23316-23475 bp Feature: domain Description: HNHc Note: nucleases Location: 23 3 16-23 475 bp Feature: gene Location: 23924-25393 bp Ori: KKG81093.1 Feature: domain Description: MATE_Wzx_like Location: 23945-25127 bp Feature: domain Description: MATE_Wzx_like Location: 23 945-25127 bp Feature: gene Location: 25421-25927 bp Ori: KKG81094.1 Feature: domain Description: LbH_MAT_like Location: 25580-25907 bp Feature: domain Description: LbH_MAT_like Location: 25580-25907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254), RVT-GII, GIIM (pfam08388), HNHc (smart00507), MATE_Wzx_like (cd13128), LbH_MAT_like (cd04647)