myRT

myRT report for GCA_000979735.1_gtlEnvA5udCFS

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Seq: JJPQ01000079.1 Methanosarcina mazei strain 3.H.A.2.5 scaffold1_1_size107921-refined, whole genome shotgun sequence (107546 bp)
Overview 1 RT 1: 44499-46980 bp Neighborhood of RT #1 [44499, 47300] Cmr1 Cmr1 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 44499-45332 bp Ori: KKG81921.1 Feature: domain Description: Cmr1 Location: 44508-44742 bp Feature: domain Description: Cmr1 Location: 44508-44742 bp Feature: domain Description: Cmr1 Location: 45177-45279 bp Feature: domain Description: Cmr1 Location: 451 77-45279 bp Feature: gene Location: 45380-46039 bp Ori: KKG81922.1 Feature: domain Description: Cas6b_N Location: 45386-45686 bp Feature: domain Description: Cas6b_N Location: 45386-45686 bp Feature: domain Description: Cas6b_C Location: 45698-46031 bp Feature: domain Description: Cas6b_C Location: 45698-46031 bp Feature: gene Location: 46176-47300 bp Ori: KKG81923.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 46356-46980 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 46356-46980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cmr1 (COG1367), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR

Seq: JJPQ01000010.1 Methanosarcina mazei strain 3.H.A.2.5 scaffold17_1_size44107-refined, whole genome shotgun sequence (44107 bp)
Overview 1 RT 1: 12443-21220 bp Neighborhood of RT #1 [12443, 21225] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12443-12835 bp Ori: KKG86076.1 Feature: domain Description: YkvA Location: 12542-12830 bp Feature: domain Description: YkvA Location: 12 542 -12 830 bp Feature: gene Location: 13453-13749 bp Ori: KKG86077.1 Feature: domain Description: COG1669 Location: 13456-13738 bp Feature: domain Description: COG1669 Location: 13456-13738 bp Feature: gene Location: 14744-16426 bp Ori: KKG86078.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14984-15524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14984-1552 4 bp Feature: gene Location: 16442-19336 bp Ori: KKG86079.1 Feature: domain Description: Lhr Location: 16457-18968 bp Feature: domain Description: Lhr Location: 16457-18968 bp Feature: gene Location: 19690-21225 bp Ori: KKG86080.1 Feature: domain Description: lysS Location: 19783-21220 bp Feature: domain Description: lysS Location: 19783-2 12 2 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPQ01000142.1 Methanosarcina mazei strain 3.H.A.2.5 scaffold102_1_size17493-refined, whole genome shotgun sequence (17085 bp)
Overview 1 RT 1: 3536-7552 bp Neighborhood of RT #1 [3536, 7605] RVT_N RVT-GII GIIM COG4584 DUF2683 Feature: gene Location: 3536-3775 bp Feature: gene Location: 3779-3976 bp Feature: gene Location: 4317-5816 bp Ori: KKG78929.1 Feature: domain Description: RVT_N Location: 4386-4629 bp Feature: domain Description: RVT_N Location: 43 86-4629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4674-5331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4674-53 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 5385-5616 bp Feature: domain Description: GIIM Note: maturase Location: 53 85-5616 bp Feature: gene Location: 6238-6927 bp Ori: KKG78930.1 Feature: domain Description: COG4584 Location: 6241-6808 bp Feature: domain Description: COG4584 Location: 6241-6808 bp Feature: gene Location: 7324-7605 bp Ori: KKG78931.1 Feature: domain Description: DUF2683 Location: 7339-7552 bp Feature: domain Description: DUF2683 Location: 73 3 9-7552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), DUF2683 (pfam10884)