myRT

myRT report for GCA_000979765.1_gtlEnvA5udCFS

Download annotations/find similar RTs

Seq: JJPV01000090.1 Methanosarcina mazei strain 3.H.M.1B.2 scaffold13_1_size138620-refined, whole genome shotgun sequence (138013 bp)
Overview 1 RT 1: 45550-48576 bp Neighborhood of RT #1 [45550, 48704] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 45550-46674 bp Ori: KKG98052.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 45730-46354 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 45730-46354 bp Feature: gene Location: 46796-47470 bp Ori: KKG98053.1 Feature: domain Description: Cas6b_N Location: 46817-47117 bp Feature: domain Description: Cas6b_N Location: 4681 7-471 1 7 bp Feature: domain Description: Cas6b_C Location: 47129-47462 bp Feature: domain Description: Cas6b_C Location: 471 29-47462 bp Feature: gene Location: 47511-48704 bp Ori: KKG98054.1 Feature: domain Description: DUF1887 Location: 47655-47877 bp Feature: domain Description: DUF1 887 Location: 47655-47877 bp Feature: domain Description: DUF1887 Location: 48276-48576 bp Feature: domain Description: DUF1 887 Location: 48276-48576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)

Seq: JJPV01000038.1 Methanosarcina mazei strain 3.H.M.1B.2 scaffold27_1_size50411-refined, whole genome shotgun sequence (50149 bp)
Overview 1 RT 1: 25897-30504 bp Neighborhood of RT #1 [25897, 30509] DnaC RVT_N RVT-GII GIIM COG4584 HicB Feature: gene Location: 25897-26670 bp Ori: KKH01878.1 Feature: domain Description: DnaC Location: 25900-26644 bp Feature: domain Description: DnaC Location: 2 5900-2 6644 bp Feature: gene Location: 26856-27107 bp Feature: gene Location: 27448-28947 bp Ori: KKH01880.1 Feature: domain Description: RVT_N Location: 27517-27760 bp Feature: domain Description: RVT_N Location: 2 7517-2 7760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27805-28462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7805-2 8462 bp Feature: domain Description: GIIM Note: maturase Location: 28516-28747 bp Feature: domain Description: GIIM Note: maturase Location: 2 8516-2 8747 bp Feature: gene Location: 29369-30058 bp Ori: KKH01881.1 Feature: domain Description: COG4584 Location: 29372-29939 bp Feature: domain Description: COG4584 Location: 2 9372 -2 9939 bp Feature: gene Location: 30279-30509 bp Ori: KKH01882.1 Feature: domain Description: HicB Location: 30336-30504 bp Feature: domain Description: HicB Location: 30336-30504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaC (COG1484), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), HicB (pfam05534)

Seq: JJPV01000007.1 Methanosarcina mazei strain 3.H.M.1B.2 scaffold34_1_size39181-refined, whole genome shotgun sequence (39181 bp)
Overview 1 RT 1: 31941-38235 bp Neighborhood of RT #1 [31941, 38249] MATE_Wzx_like GIIM HNHc RVT-GII Type_II_cohesin Big_9 Big_9 Dockerin_II Feature: gene Location: 31941-33410 bp Ori: KKH03820.1 Feature: domain Description: MATE_Wzx_like Location: 31962-33144 bp Feature: domain Description: MATE_Wzx_like Location: 3 1962-3 3 144 bp Feature: gene Location: 33848-34375 bp Ori: KKH03821.1 Feature: domain Description: GIIM Note: maturase Location: 33851-34019 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 851-3 4019 bp Feature: domain Description: HNHc Note: nucleases Location: 34205-34364 bp Feature: domain Description: HNHc Note: nucleases Location: 3 4205-3 43 64 bp Feature: gene Location: 34388-34666 bp Ori: KKH03822.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34421-34565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4421-3 4565 bp Feature: gene Location: 35622-38249 bp Ori: KKH03823.1 Feature: domain Description: Type_II_cohesin Location: 37134-37497 bp Feature: domain Description: Type_II_cohesin Location: 3 713 4-3 7497 bp Feature: domain Description: Big_9 Location: 37503-37755 bp Feature: domain Description: Big_9 Location: 3 7503 -3 7755 bp Feature: domain Description: Big_9 Location: 37773-38019 bp Feature: domain Description: Big_9 Location: 3 7773 -3 8019 bp Feature: domain Description: Dockerin_II Location: 38079-38235 bp Feature: domain Description: Dockerin_II Location: 3 8079-3 823 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_Wzx_like (cd13128), GIIM (pfam08388), HNHc (smart00507), RVT-GII, Type_II_cohesin (cd08547), Big_9 (pfam17963), Dockerin_II (cd14254)