myRT

myRT report for GCA_000979815.1_gtlEnvA5udCFS

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Seq: JJPY01000113.1 Methanosarcina mazei strain 3.H.T.1A.1 scaffold116_1_size2183-refined, whole genome shotgun sequence (1988 bp)
Overview 1 RT 1: 1-1988 bp Neighborhood of RT #1 [1, 1988] RVT_N RVT-GII Feature: gene Location: 1-966 bp Ori: KKH05407.1 Feature: domain Description: RVT_N Location: 70-313 bp Feature: domain Description: RVT_N Location: 70-31 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-967 bp Feature: gene Location: 1394-1988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JJPY01000106.1 Methanosarcina mazei strain 3.H.T.1A.1 scaffold2_1_size212454-refined, whole genome shotgun sequence (211658 bp)
Overview 1 RT 1: 164961-167709 bp Neighborhood of RT #1 [164961, 167762] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 164961-166085 bp Ori: KKH06157.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 165141-165765 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 165141-165765 bp Feature: gene Location: 166222-166881 bp Ori: KKH06158.1 Feature: domain Description: Cas6b_N Location: 166228-166528 bp Feature: domain Description: Cas6b_N Location: 1662 2 8-16652 8 bp Feature: domain Description: Cas6b_C Location: 166540-166873 bp Feature: domain Description: Cas6b_C Location: 166540-166873 bp Feature: gene Location: 166929-167762 bp Ori: KKH06159.1 Feature: domain Description: Cmr1 Location: 166938-167172 bp Feature: domain Description: Cmr1 Location: 166938-167172 bp Feature: domain Description: Cmr1 Location: 167607-167709 bp Feature: domain Description: Cmr1 Location: 167607-167709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)

Seq: JJPY01000077.1 Methanosarcina mazei strain 3.H.T.1A.1 scaffold32_1_size44107-refined, whole genome shotgun sequence (44107 bp)
Overview 1 RT 1: 12443-21220 bp Neighborhood of RT #1 [12443, 21225] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12443-12835 bp Ori: KKH07970.1 Feature: domain Description: YkvA Location: 12542-12830 bp Feature: domain Description: YkvA Location: 12542-1283 0 bp Feature: gene Location: 13453-13749 bp Ori: KKH07971.1 Feature: domain Description: COG1669 Location: 13456-13738 bp Feature: domain Description: COG1669 Location: 13 456-13 73 8 bp Feature: gene Location: 14744-16426 bp Ori: KKH07972.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14984-15524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14984-15524 bp Feature: gene Location: 16442-19336 bp Ori: KKH07973.1 Feature: domain Description: Lhr Location: 16457-18968 bp Feature: domain Description: Lhr Location: 16457-18968 bp Feature: gene Location: 19690-21225 bp Ori: KKH07974.1 Feature: domain Description: lysS Location: 19783-21220 bp Feature: domain Description: lysS Location: 19783 -21220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)