myRT

myRT report for GCA_000979825.1_gtlEnvA5udCFS

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Seq: JJPZ01000127.1 Methanosarcina mazei strain 3.H.T.1A.2 scaffold160_1_size2661-refined, whole genome shotgun sequence (2561 bp)
Overview 1 RT 1: 1-1340 bp Neighborhood of RT #1 [1, 1738] RVT-GII GIIM COG4584 Feature: gene Location: 1-957 bp Ori: KKH08332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0-472 bp Feature: domain Description: GIIM Note: maturase Location: 526-757 bp Feature: domain Description: GIIM Note: maturase Location: 526-757 bp Feature: gene Location: 989-1738 bp Ori: KKH08333.1 Feature: domain Description: COG4584 Location: 1058-1340 bp Feature: domain Description: COG4584 Location: 1 058-1 340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4584 (Transposase )

Seq: JJPZ01000051.1 Methanosarcina mazei strain 3.H.T.1A.2 scaffold87_1_size28876-refined, whole genome shotgun sequence (28361 bp)
Overview 1 RT 1: 1-2740 bp Neighborhood of RT #1 [1, 2793] RVT_N RVT-GII COG4584 DUF2683 Feature: gene Location: 1-1004 bp Ori: KKH12294.1 Feature: domain Description: RVT_N Location: 70-313 bp Feature: domain Description: RVT_N Location: 70-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1003 bp Feature: gene Location: 1426-2115 bp Ori: KKH12295.1 Feature: domain Description: COG4584 Location: 1429-1996 bp Feature: domain Description: COG4584 Location: 142 9-1996 bp Feature: gene Location: 2512-2793 bp Ori: KKH12296.1 Feature: domain Description: DUF2683 Location: 2527-2740 bp Feature: domain Description: DUF2 683 Location: 2 52 7-2 740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG4584 (Transposase ), DUF2683 (pfam10884)

Seq: JJPZ01000014.1 Methanosarcina mazei strain 3.H.T.1A.2 scaffold21_1_size44107-refined, whole genome shotgun sequence (44107 bp)
Overview 1 RT 1: 12443-21220 bp Neighborhood of RT #1 [12443, 21225] YkvA COG1669 RVT-Retrons Lhr lysS Feature: gene Location: 12443-12835 bp Ori: KKH14520.1 Feature: domain Description: YkvA Location: 12542-12830 bp Feature: domain Description: YkvA Location: 12542-1283 0 bp Feature: gene Location: 13453-13749 bp Ori: KKH14521.1 Feature: domain Description: COG1669 Location: 13456-13738 bp Feature: domain Description: COG1669 Location: 13 456-13 73 8 bp Feature: gene Location: 14744-16426 bp Ori: KKH14522.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14984-15524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14984-15524 bp Feature: gene Location: 16442-19336 bp Ori: KKH14523.1 Feature: domain Description: Lhr Location: 16457-18968 bp Feature: domain Description: Lhr Location: 16457-18968 bp Feature: gene Location: 19690-21225 bp Ori: KKH14524.1 Feature: domain Description: lysS Location: 19783-21220 bp Feature: domain Description: lysS Location: 19783 -21220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkvA (COG3339), COG1669 (Predicted nucleotidyltransferase ), RVT-Retrons, Lhr (COG1201), lysS (PRK02983)

Seq: JJPZ01000010.1 Methanosarcina mazei strain 3.H.T.1A.2 scaffold2_1_size93821-refined, whole genome shotgun sequence (93621 bp)
Overview 1 RT 1: 68974-71722 bp Neighborhood of RT #1 [68974, 71775] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 68974-70098 bp Ori: KKH14805.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 69154-69778 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 69154 -69778 bp Feature: gene Location: 70235-70894 bp Ori: KKH14806.1 Feature: domain Description: Cas6b_N Location: 70241-70541 bp Feature: domain Description: Cas6b_N Location: 7024 1-7054 1 bp Feature: domain Description: Cas6b_C Location: 70553-70886 bp Feature: domain Description: Cas6b_C Location: 70553-70886 bp Feature: gene Location: 70942-71775 bp Ori: KKH14807.1 Feature: domain Description: Cmr1 Location: 70951-71185 bp Feature: domain Description: Cmr1 Location: 70951-71185 bp Feature: domain Description: Cmr1 Location: 71620-71722 bp Feature: domain Description: Cmr1 Location: 71620-71722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)