myRT

myRT report for GCA_000979935.1_gtlEnvA5udCFS

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Seq: JJQK01000114.1 Methanosarcina mazei strain 1.H.A.2.1 scaffold53_1_size42874-refined, whole genome shotgun sequence (42856 bp)
Overview 1 RT 1: 36226-40242 bp Neighborhood of RT #1 [36226, 40295] RVT_N RVT-GII GIIM COG4584 DUF2683 Feature: gene Location: 36226-36465 bp Feature: gene Location: 36469-36666 bp Feature: gene Location: 37007-38506 bp Ori: KKH51920.1 Feature: domain Description: RVT_N Location: 37076-37319 bp Feature: domain Description: RVT_N Location: 37076-3731 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37364-38021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37364-38021 bp Feature: domain Description: GIIM Note: maturase Location: 38075-38306 bp Feature: domain Description: GIIM Note: maturase Location: 38075-38306 bp Feature: gene Location: 38928-39617 bp Ori: KKH51921.1 Feature: domain Description: COG4584 Location: 38931-39498 bp Feature: domain Description: COG4584 Location: 38931 -39498 bp Feature: gene Location: 40014-40295 bp Ori: KKH51922.1 Feature: domain Description: DUF2683 Location: 40029-40242 bp Feature: domain Description: DUF2683 Location: 40029-40242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), DUF2683 (pfam10884)

Seq: JJQK01000105.1 Methanosarcina mazei strain 1.H.A.2.1 scaffold13_1_size38891-refined, whole genome shotgun sequence (38804 bp)
Overview 1 RT 1: 23281-25149 bp Neighborhood of RT #1 [23281, 25694] RVT-CRISPR GIIM Cas6b_N Cas6b_C Cmr1 Feature: gene Location: 23281-23727 bp Ori: KKH52392.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 23284-23401 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 32 84-2 3401 bp Feature: domain Description: GIIM Note: maturase Location: 23563-23722 bp Feature: domain Description: GIIM Note: maturase Location: 2 3563-2 372 2 bp Feature: gene Location: 23865-24524 bp Ori: KKH52393.1 Feature: domain Description: Cas6b_N Location: 23871-24171 bp Feature: domain Description: Cas6b_N Location: 2 3871-2 4171 bp Feature: domain Description: Cas6b_C Location: 24183-24516 bp Feature: domain Description: Cas6b_C Location: 2 4183-2 4516 bp Feature: gene Location: 24591-25694 bp Ori: KKH52394.1 Feature: domain Description: Cmr1 Location: 24597-25149 bp Feature: domain Description: Cmr1 Location: 2 4597-2 5149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)