myRT

myRT report for GCA_000979995.1_gtlEnvA5udCFS

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Seq: JJQN01000148.1 Methanosarcina mazei strain 1.H.A.2.6 scaffold63_1_size20235-refined, whole genome shotgun sequence (20235 bp)
Overview 1 RT 1: 11179-13047 bp Neighborhood of RT #1 [11179, 13592] RVT-CRISPR GIIM Cas6b_N Cas6b_C Cmr1 Feature: gene Location: 11179-11625 bp Ori: KKH56684.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11182-11299 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 1 1 82-1 1 299 bp Feature: domain Description: GIIM Note: maturase Location: 11461-11620 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 461 -1 1 620 bp Feature: gene Location: 11763-12422 bp Ori: KKH56685.1 Feature: domain Description: Cas6b_N Location: 11769-12069 bp Feature: domain Description: Cas6b_N Location: 1 1 769-1 2069 bp Feature: domain Description: Cas6b_C Location: 12081-12414 bp Feature: domain Description: Cas6b_C Location: 1 2081 -1 241 4 bp Feature: gene Location: 12489-13592 bp Ori: KKH56686.1 Feature: domain Description: Cmr1 Location: 12495-13047 bp Feature: domain Description: Cmr1 Location: 1 2495-1 3047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)

Seq: JJQN01000150.1 Methanosarcina mazei strain 1.H.A.2.6 scaffold127_1_size7626-refined, whole genome shotgun sequence (7426 bp)
Overview 1 RT 1: 1101-5914 bp Neighborhood of RT #1 [1101, 5964] DUF2683 COG4584 RVT_N RVT-GII GIIM DnaC Feature: gene Location: 1101-1382 bp Ori: KKH56609.1 Feature: domain Description: DUF2683 Location: 1116-1329 bp Feature: domain Description: DUF2 683 Location: 1116-132 9 bp Feature: gene Location: 1779-2468 bp Ori: KKH56610.1 Feature: domain Description: COG4584 Location: 1782-2349 bp Feature: domain Description: COG4584 Location: 1782 -2 349 bp Feature: gene Location: 2890-4389 bp Ori: KKH56611.1 Feature: domain Description: RVT_N Location: 2959-3202 bp Feature: domain Description: RVT_N Location: 2 959-32 02 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3247-3904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 47-3904 bp Feature: domain Description: GIIM Note: maturase Location: 3958-4189 bp Feature: domain Description: GIIM Note: maturase Location: 3958-4189 bp Feature: gene Location: 4821-5042 bp Feature: gene Location: 5167-5964 bp Ori: KKH56613.1 Feature: domain Description: DnaC Location: 5170-5914 bp Feature: domain Description: DnaC Location: 5170-5914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2683 (pfam10884), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DnaC (COG1484)

Seq: JJQN01000042.1 Methanosarcina mazei strain 1.H.A.2.6 scaffold4_1_size103101-refined, whole genome shotgun sequence (102991 bp)
Overview 1 RT 1: 86956-95733 bp Neighborhood of RT #1 [86956, 95738] lysS Lhr RVT-Retrons COG1669 YkvA Feature: gene Location: 86956-88491 bp Ori: KKH61754.1 Feature: domain Description: lysS Location: 87049-88486 bp Feature: domain Description: lysS Location: 87049-88486 bp Feature: gene Location: 88845-91739 bp Ori: KKH61755.1 Feature: domain Description: Lhr Location: 88860-91371 bp Feature: domain Description: Lhr Location: 88860-913 71 bp Feature: gene Location: 91755-93437 bp Ori: KKH61756.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91995-92535 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91995-9253 5 bp Feature: gene Location: 94432-94728 bp Ori: KKH61757.1 Feature: domain Description: COG1669 Location: 94435-94717 bp Feature: domain Description: COG1669 Location: 9443 5-94717 bp Feature: gene Location: 95346-95738 bp Ori: KKH61758.1 Feature: domain Description: YkvA Location: 95445-95733 bp Feature: domain Description: YkvA Location: 95445-9573 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lysS (PRK02983), Lhr (COG1201), RVT-Retrons, COG1669 (Predicted nucleotidyltransferase ), YkvA (COG3339)

Seq: JJQN01000137.1 Methanosarcina mazei strain 1.H.A.2.6 scaffold20_1_size51976-refined, whole genome shotgun sequence (51695 bp)
Overview 1 RT 1: 39713-42461 bp Neighborhood of RT #1 [39713, 42514] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 39713-40837 bp Ori: KKH57337.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39893-40517 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 39893-4 0517 bp Feature: gene Location: 40974-41633 bp Ori: KKH57338.1 Feature: domain Description: Cas6b_N Location: 40980-41280 bp Feature: domain Description: Cas6b_N Location: 4 0980-4 1280 bp Feature: domain Description: Cas6b_C Location: 41292-41625 bp Feature: domain Description: Cas6b_C Location: 4 1292-4 1625 bp Feature: gene Location: 41681-42514 bp Ori: KKH57339.1 Feature: domain Description: Cmr1 Location: 41690-41924 bp Feature: domain Description: Cmr1 Location: 4 1690-4 1924 bp Feature: domain Description: Cmr1 Location: 42359-42461 bp Feature: domain Description: Cmr1 Location: 4 2359-4 24 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)