myRT

myRT report for GCA_000980025.1_gtlEnvA5udCFS

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Seq: JJQQ01000143.1 Methanosarcina mazei strain 1.H.M.0.1 scaffold133_1_size5190-refined, whole genome shotgun sequence (4790 bp)
Overview 1 RT 1: 489-2371 bp Neighborhood of RT #1 [489, 2769] RVT_N RVT-GII GIIM COG4584 Feature: gene Location: 489-1988 bp Ori: KKH64777.1 Feature: domain Description: RVT_N Location: 558-801 bp Feature: domain Description: RVT_N Location: 558-801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 503 bp Feature: domain Description: GIIM Note: maturase Location: 1557-1788 bp Feature: domain Description: GIIM Note: maturase Location: 1 557-1 788 bp Feature: gene Location: 2020-2769 bp Ori: KKH64778.1 Feature: domain Description: COG4584 Location: 2089-2371 bp Feature: domain Description: COG4584 Location: 2089-2371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase )

Seq: JJQQ01000119.1 Methanosarcina mazei strain 1.H.M.0.1 scaffold35_1_size50505-refined, whole genome shotgun sequence (50405 bp)
Overview 1 RT 1: 22697-25723 bp Neighborhood of RT #1 [22697, 25851] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 22697-23821 bp Ori: KKH65562.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22877-23501 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 2 877-2 3501 bp Feature: gene Location: 23943-24617 bp Ori: KKH65563.1 Feature: domain Description: Cas6b_N Location: 23964-24264 bp Feature: domain Description: Cas6b_N Location: 2 3964-2 42 64 bp Feature: domain Description: Cas6b_C Location: 24276-24609 bp Feature: domain Description: Cas6b_C Location: 2 42 76-2 4609 bp Feature: gene Location: 24658-25851 bp Ori: KKH65564.1 Feature: domain Description: DUF1887 Location: 24802-25024 bp Feature: domain Description: DUF1887 Location: 2 4802 -2 502 4 bp Feature: domain Description: DUF1887 Location: 25423-25723 bp Feature: domain Description: DUF1887 Location: 2 542 3-2 572 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)