myRT

myRT report for GCA_000980055.1_gtlEnvA5udCFS

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Seq: JJQR01000149.1 Methanosarcina mazei strain 1.H.M.1A.1 scaffold156_1_size3695-refined, whole genome shotgun sequence (3595 bp)
Overview 1 RT 1: 1-1175 bp Neighborhood of RT #1 [1, 1573] RVT-GII GIIM COG4584 Feature: gene Location: 1-792 bp Ori: KKH71543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-307 bp Feature: domain Description: GIIM Note: maturase Location: 361-592 bp Feature: domain Description: GIIM Note: maturase Location: 361 -592 bp Feature: gene Location: 824-1573 bp Ori: KKH71544.1 Feature: domain Description: COG4584 Location: 893-1175 bp Feature: domain Description: COG4584 Location: 893-1 1 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4584 (Transposase )

Seq: JJQR01000085.1 Methanosarcina mazei strain 1.H.M.1A.1 scaffold16_1_size55105-refined, whole genome shotgun sequence (55005 bp)
Overview 1 RT 1: 43207-46233 bp Neighborhood of RT #1 [43207, 46361] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 43207-44331 bp Ori: KKH74787.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 43387-44011 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 43387-44011 bp Feature: gene Location: 44453-45127 bp Ori: KKH74788.1 Feature: domain Description: Cas6b_N Location: 44474-44774 bp Feature: domain Description: Cas6b_N Location: 44474-44774 bp Feature: domain Description: Cas6b_C Location: 44786-45119 bp Feature: domain Description: Cas6b_C Location: 44786-45119 bp Feature: gene Location: 45168-46361 bp Ori: KKH74789.1 Feature: domain Description: DUF1887 Location: 45312-45534 bp Feature: domain Description: DUF1887 Location: 45312 -45534 bp Feature: domain Description: DUF1887 Location: 45933-46233 bp Feature: domain Description: DUF1887 Location: 45933-462 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)

Seq: JJQR01000078.1 Methanosarcina mazei strain 1.H.M.1A.1 scaffold44_1_size30115-refined, whole genome shotgun sequence (29657 bp)
Overview 1 RT 1: 1-2571 bp Neighborhood of RT #1 [1, 2576] RVT_N RVT-GII COG4584 HicB Feature: gene Location: 1-1014 bp Ori: KKH75294.1 Feature: domain Description: RVT_N Location: 70-313 bp Feature: domain Description: RVT_N Location: 70-3 13 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 58-1015 bp Feature: gene Location: 1436-2125 bp Ori: KKH75295.1 Feature: domain Description: COG4584 Location: 1439-2006 bp Feature: domain Description: COG4584 Location: 143 9-2006 bp Feature: gene Location: 2346-2576 bp Ori: KKH75296.1 Feature: domain Description: HicB Location: 2403-2571 bp Feature: domain Description: HicB Location: 2403 -2571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG4584 (Transposase ), HicB (pfam05534)