myRT

myRT report for GCA_000980075.1_gtlEnvA5udCFS

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Seq: JJQW01000114.1 Methanosarcina mazei strain 1.H.M.2.3 scaffold45_1_size29931-refined, whole genome shotgun sequence (29669 bp)
Overview 1 RT 1: 1-2571 bp Neighborhood of RT #1 [1, 2576] RVT_N RVT-GII COG4584 HicB Feature: gene Location: 1-1014 bp Ori: KKH85280.1 Feature: domain Description: RVT_N Location: 70-313 bp Feature: domain Description: RVT_N Location: 70-31 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-1 01 5 bp Feature: gene Location: 1436-2125 bp Ori: KKH85281.1 Feature: domain Description: COG4584 Location: 1439-2006 bp Feature: domain Description: COG4584 Location: 1 439-2006 bp Feature: gene Location: 2346-2576 bp Ori: KKH85282.1 Feature: domain Description: HicB Location: 2403-2571 bp Feature: domain Description: HicB Location: 2403-2571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG4584 (Transposase ), HicB (pfam05534)

Seq: JJQW01000065.1 Methanosarcina mazei strain 1.H.M.2.3 scaffold14_1_size82983-refined, whole genome shotgun sequence (82569 bp)
Overview 1 RT 1: 36223-39057 bp Neighborhood of RT #1 [36223, 39377] DUF1887 DUF1887 Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 36223-37416 bp Ori: KKH88178.1 Feature: domain Description: DUF1887 Location: 36367-36589 bp Feature: domain Description: DUF1887 Location: 36367-36589 bp Feature: domain Description: DUF1887 Location: 36988-37288 bp Feature: domain Description: DUF1887 Location: 36988-372 88 bp Feature: gene Location: 37457-38131 bp Ori: KKH88179.1 Feature: domain Description: Cas6b_N Location: 37478-37778 bp Feature: domain Description: Cas6b_N Location: 37478-37778 bp Feature: domain Description: Cas6b_C Location: 37790-38123 bp Feature: domain Description: Cas6b_C Location: 37790-3812 3 bp Feature: gene Location: 38253-39377 bp Ori: KKH88180.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38433-39057 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 38433-39057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1887 (pfam09002), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR