myRT

myRT report for GCA_000980085.1_gtlEnvA5udCFS

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Seq: JJQT01000243.1 Methanosarcina mazei strain 1.H.M.1A.3 scaffold116_1_size12532-refined, whole genome shotgun sequence (12532 bp)
Overview 1 RT 1: 734-3760 bp Neighborhood of RT #1 [734, 3888] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 734-1858 bp Ori: KKH72295.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 914-1538 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 91 4-1 538 bp Feature: gene Location: 1980-2654 bp Ori: KKH72296.1 Feature: domain Description: Cas6b_N Location: 2001-2301 bp Feature: domain Description: Cas6b_N Location: 2001 -2301 bp Feature: domain Description: Cas6b_C Location: 2313-2646 bp Feature: domain Description: Cas6b_C Location: 231 3-2646 bp Feature: gene Location: 2695-3888 bp Ori: KKH72297.1 Feature: domain Description: DUF1887 Location: 2839-3061 bp Feature: domain Description: DUF1 887 Location: 2839-3061 bp Feature: domain Description: DUF1887 Location: 3460-3760 bp Feature: domain Description: DUF1 887 Location: 3460-3760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)

Seq: JJQT01000033.1 Methanosarcina mazei strain 1.H.M.1A.3 scaffold234_1_size1576-refined, whole genome shotgun sequence (1476 bp)
Overview 1 RT 1: 483-1473 bp Neighborhood of RT #1 [483, 1476] RVT_N RVT-GII Feature: gene Location: 483-1476 bp Ori: KKH82209.1 Feature: domain Description: RVT_N Location: 552-795 bp Feature: domain Description: RVT_N Location: 552 -795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JJQT01000066.1 Methanosarcina mazei strain 1.H.M.1A.3 scaffold222_1_size2095-refined, whole genome shotgun sequence (2095 bp)
Overview 1 RT 1: 1-2095 bp Neighborhood of RT #1 [1, 2095] RVT-GII GIIM COG4584 DnaC Feature: gene Location: 1-954 bp Ori: KKH80846.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-469 bp Feature: domain Description: GIIM Note: maturase Location: 523-754 bp Feature: domain Description: GIIM Note: maturase Location: 523 -754 bp Feature: gene Location: 986-1735 bp Ori: KKH80847.1 Feature: domain Description: COG4584 Location: 1055-1337 bp Feature: domain Description: COG4584 Location: 1055-13 3 7 bp Feature: gene Location: 1732-2095 bp Ori: KKH80848.1 Feature: domain Description: DnaC Location: 1735-2095 bp Feature: domain Description: DnaC Location: 173 5-2095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), DnaC (COG1484)