myRT

myRT report for GCA_000980105.1_gtlEnvA5udCFS

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Seq: JJQX01000137.1 Methanosarcina mazei strain 1.H.M.2.4 scaffold193_1_size4003-refined, whole genome shotgun sequence (3698 bp)
Overview 1 RT 1: 313-3337 bp Neighborhood of RT #1 [313, 3387] RVT_N RVT-GII GIIM COG4584 DnaC Feature: gene Location: 313-1812 bp Ori: KKH93672.1 Feature: domain Description: RVT_N Location: 382-625 bp Feature: domain Description: RVT_N Location: 382-625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670-1 327 bp Feature: domain Description: GIIM Note: maturase Location: 1381-1612 bp Feature: domain Description: GIIM Note: maturase Location: 1 381 -1 61 2 bp Feature: gene Location: 1844-2593 bp Ori: KKH93673.1 Feature: domain Description: COG4584 Location: 1913-2195 bp Feature: domain Description: COG4584 Location: 1 91 3-21 95 bp Feature: gene Location: 2590-3387 bp Ori: KKH93674.1 Feature: domain Description: DnaC Location: 2593-3337 bp Feature: domain Description: DnaC Location: 2593-3337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), DnaC (COG1484)

Seq: JJQX01000047.1 Methanosarcina mazei strain 1.H.M.2.4 scaffold45_1_size28988-refined, whole genome shotgun sequence (28988 bp)
Overview 1 RT 1: 17197-20223 bp Neighborhood of RT #1 [17197, 20351] RVT-CRISPR Cas6b_N Cas6b_C DUF1887 DUF1887 Feature: gene Location: 17197-18321 bp Ori: KKH98189.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 17377-18001 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 17377-18001 bp Feature: gene Location: 18443-19117 bp Ori: KKH98190.1 Feature: domain Description: Cas6b_N Location: 18464-18764 bp Feature: domain Description: Cas6b_N Location: 18464-18764 bp Feature: domain Description: Cas6b_C Location: 18776-19109 bp Feature: domain Description: Cas6b_C Location: 18776-19109 bp Feature: gene Location: 19158-20351 bp Ori: KKH98191.1 Feature: domain Description: DUF1887 Location: 19302-19524 bp Feature: domain Description: DUF1887 Location: 19302 -1952 4 bp Feature: domain Description: DUF1887 Location: 19923-20223 bp Feature: domain Description: DUF1887 Location: 1992 3-2 02 2 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, DUF1887 (pfam09002)