myRT

myRT report for GCA_000980625.1_ASM98062v1

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Seq: LBCG01000002.1 Roseburia sp. UNK.MGS-15 scaffold-1, whole genome shotgun sequence (1066928 bp)
Overview 1 RT 1: 977959-982434 bp Neighborhood of RT #1 [977959, 982436] RVT-GII Gph PRK05755 Feature: gene Location: 977959-978138 bp Feature: gene Location: 978340-978483 bp Feature: gene Location: 978470-978925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978680-978800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978680-978800 bp Feature: gene Location: 979087-979731 bp Feature: domain Description: Gph Location: 979120-979720 bp Feature: domain Description: Gph Location: 9791 20-979720 bp Feature: gene Location: 979821-982436 bp Feature: domain Description: PRK05755 Location: 979830-982434 bp Feature: domain Description: PRK05755 Location: 979830-982434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Gph (COG0546), PRK05755 (DNA polymerase I; Provisional)

Seq: LBCG01000012.1 Roseburia sp. UNK.MGS-15 scaffold-11, whole genome shotgun sequence (105690 bp)
Overview 1 RT 1: 81873-87395 bp Neighborhood of RT #1 [81873, 87400] DUF3801 VirD4 VirD4 RVT-GII TraG-D_C Maff2 Feature: gene Location: 81873-82349 bp Feature: domain Description: DUF3801 Location: 81948-82233 bp Feature: domain Description: DUF3801 Location: 81948-82 2 33 bp Feature: gene Location: 82346-83191 bp Feature: domain Description: VirD4 Location: 82601-82913 bp Feature: domain Description: VirD4 Location: 82 601-82 913 bp Feature: domain Description: VirD4 Location: 82985-83153 bp Feature: domain Description: VirD4 Location: 82 985-83153 bp Feature: gene Location: 83850-85757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84180-84924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84180-8492 4 bp Feature: gene Location: 85979-86941 bp Feature: domain Description: TraG-D_C Location: 86369-86723 bp Feature: domain Description: TraG-D_C Location: 86369-8672 3 bp Feature: gene Location: 87185-87400 bp Feature: domain Description: Maff2 Location: 87188-87395 bp Feature: domain Description: Maff2 Location: 87188-87395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: LBCG01000016.1 Roseburia sp. UNK.MGS-15 scaffold-15, whole genome shotgun sequence (77303 bp)
Overview 1 RT 1: 42269-50107 bp Neighborhood of RT #1 [42269, 50211] NlpD PRK13914 TraC-F-type RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 42269-44857 bp Feature: domain Description: NlpD Location: 43232-44384 bp Feature: domain Description: NlpD Location: 43 23 2-443 84 bp Feature: domain Description: PRK13914 Location: 44471-44843 bp Feature: domain Description: PRK13 914 Location: 44471-44843 bp Feature: gene Location: 44857-46311 bp Feature: domain Description: TraC-F-type Location: 44899-46117 bp Feature: domain Description: TraC-F-type Location: 44899-46117 bp Feature: gene Location: 46438-48258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46705-47527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46705-47527 bp Feature: domain Description: Intron_maturas2 Location: 47611-47941 bp Feature: domain Description: Intron_maturas2 Location: 47611-47941 bp Feature: domain Description: HNHc Note: nucleases Location: 48067-48220 bp Feature: domain Description: HNHc Note: nucleases Location: 48067-48220 bp Feature: gene Location: 48864-49856 bp Feature: gene Location: 49816-50211 bp Feature: domain Description: PrgI Location: 49837-50107 bp Feature: domain Description: PrgI Location: 4983 7-50107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), PRK13914 (invasion associated endopeptidase), TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666)

Seq: LBCG01000017.1 Roseburia sp. UNK.MGS-15 scaffold-16, whole genome shotgun sequence (117062 bp)
Overview 1 RT 1: 74037-81965 bp Neighborhood of RT #1 [74037, 81979] PrgI RVT-GII Intron_maturas2 HNHc TraC-F-type NlpD PRK13914 Feature: gene Location: 74037-74432 bp Feature: domain Description: PrgI Location: 74058-74328 bp Feature: domain Description: PrgI Location: 74 058-74 328 bp Feature: gene Location: 74392-75384 bp Feature: gene Location: 75990-77810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76257-77079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76257-77079 bp Feature: domain Description: Intron_maturas2 Location: 77163-77493 bp Feature: domain Description: Intron_maturas2 Location: 77163-774 93 bp Feature: domain Description: HNHc Note: nucleases Location: 77619-77772 bp Feature: domain Description: HNHc Note: nucleases Location: 77619-77772 bp Feature: gene Location: 77937-79391 bp Feature: domain Description: TraC-F-type Location: 77979-79197 bp Feature: domain Description: TraC-F-type Location: 77979-79197 bp Feature: gene Location: 79391-81979 bp Feature: domain Description: NlpD Location: 80354-81506 bp Feature: domain Description: NlpD Location: 80354 -81506 bp Feature: domain Description: PRK13914 Location: 81593-81965 bp Feature: domain Description: PRK13914 Location: 81593-81965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraC-F-type (TIGR02746), NlpD (COG0739), PRK13914 (invasion associated endopeptidase)

Seq: LBCG01000181.1 Roseburia sp. UNK.MGS-15 scaffold-877, whole genome shotgun sequence (70118 bp)
Overview 1 RT 1: 35084-42922 bp Neighborhood of RT #1 [35084, 43026] NlpD PRK13914 TraC-F-type RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 35084-37672 bp Feature: domain Description: NlpD Location: 36047-37199 bp Feature: domain Description: NlpD Location: 36047-37199 bp Feature: domain Description: PRK13914 Location: 37286-37658 bp Feature: domain Description: PRK13914 Location: 37286-3765 8 bp Feature: gene Location: 37672-39126 bp Feature: domain Description: TraC-F-type Location: 37714-38932 bp Feature: domain Description: TraC-F-type Location: 37714-38932 bp Feature: gene Location: 39253-41073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39520-40342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395 20-40342 bp Feature: domain Description: Intron_maturas2 Location: 40426-40756 bp Feature: domain Description: Intron_maturas2 Location: 40426-4075 6 bp Feature: domain Description: HNHc Note: nucleases Location: 40882-41035 bp Feature: domain Description: HNHc Note: nucleases Location: 40882-41035 bp Feature: gene Location: 41679-42671 bp Feature: gene Location: 42631-43026 bp Feature: domain Description: PrgI Location: 42652-42922 bp Feature: domain Description: PrgI Location: 4265 2-42922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), PRK13914 (invasion associated endopeptidase), TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666)

Seq: LBCG01000010.1 Roseburia sp. UNK.MGS-15 scaffold-9, whole genome shotgun sequence (4008 bp)
Overview 1 RT 1: 160-3460 bp Neighborhood of RT #1 [160, 3495] RVT-GII AAA_10 Feature: gene Location: 160-1944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1117 bp Feature: gene Location: 2683-3495 bp Feature: domain Description: AAA_10 Location: 3274-3460 bp Feature: domain Description: AAA_10 Location: 3274-346 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)