myRT

myRT report for GCA_000980695.1_ASM98069v1

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Seq: LBCJ01000001.1 Eubacterium sp. UNK.MGS-26 contig_1, whole genome shotgun sequence (3090758 bp)
Overview 1 RT 1: 2101702-2106874 bp Neighborhood of RT #1 [2101702, 2107413] HTH_36 T4SS-DNA_transf RVT_N RVT-GII GIIM HNH VirD4 dnaG DUF3991 Toprim_2 Feature: gene Location: 2101702-2101962 bp Feature: domain Description: HTH_36 Location: 2101741-2101897 bp Feature: domain Description: HTH_36 Location: 21 01 741 -21 01 897 bp Feature: gene Location: 2101959-2102642 bp Feature: domain Description: T4SS-DNA_transf Location: 2102238-2102472 bp Feature: domain Description: T4SS-DNA_transf Location: 21 02238-21 02472 bp Feature: gene Location: 2102479-2104158 bp Feature: domain Description: RVT_N Location: 2102557-2102791 bp Feature: domain Description: RVT_N Location: 21 02557-21 02791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2102845-2103505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 02845-21 03505 bp Feature: domain Description: GIIM Note: maturase Location: 2103556-2103793 bp Feature: domain Description: GIIM Note: maturase Location: 21 03556-21 03793 bp Feature: domain Description: HNH Note: nucleases Location: 2104006-2104123 bp Feature: domain Description: HNH Note: nucleases Location: 21 04006-21 041 23 bp Feature: gene Location: 2104682-2105998 bp Feature: domain Description: VirD4 Location: 2104790-2105975 bp Feature: domain Description: VirD4 Location: 21 04790-21 05975 bp Feature: gene Location: 2106013-2107413 bp Feature: domain Description: dnaG Location: 2106124-2106343 bp Feature: domain Description: dnaG Location: 21 061 24-21 06343 bp Feature: domain Description: DUF3991 Location: 2106343-2106577 bp Feature: domain Description: DUF3991 Location: 21 06343-21 06577 bp Feature: domain Description: Toprim_2 Location: 2106601-2106874 bp Feature: domain Description: Toprim_2 Location: 21 06601 -21 06874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), T4SS-DNA_transf (pfam02534), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), VirD4 (COG3505), dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155)

Seq: LBCJ01000035.1 Eubacterium sp. UNK.MGS-26 contig_35, whole genome shotgun sequence (4125 bp)
Overview 1 RT 1: 1-4122 bp Neighborhood of RT #1 [1, 4122] RVT-UG5 nitrilase Feature: gene Location: 1-240 bp Feature: gene Location: 719-3829 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1205-1673 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 12 05-1673 bp Feature: domain Description: nitrilase Location: 3026-3695 bp Feature: domain Description: nitrilase Location: 302 6-3695 bp Feature: gene Location: 3967-4122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424)

Seq: LBCJ01000005.1 Eubacterium sp. UNK.MGS-26 contig_5, whole genome shotgun sequence (54792 bp)
Overview 1 RT 1: 2367-7968 bp Neighborhood of RT #1 [2367, 7968] TrbC TraG-D_C RVT-GII Intron_maturas2 VirD4 Feature: gene Location: 2367-2726 bp Feature: domain Description: TrbC Location: 2448-2718 bp Feature: domain Description: TrbC Location: 2448-2718 bp Feature: gene Location: 2701-3405 bp Feature: domain Description: TraG-D_C Location: 2767-3121 bp Feature: domain Description: TraG-D_C Location: 2767-3 121 bp Feature: gene Location: 3514-5481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3934-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 4-4765 bp Feature: domain Description: Intron_maturas2 Location: 4840-5143 bp Feature: domain Description: Intron_maturas2 Location: 4840-5143 bp Feature: gene Location: 5954-7165 bp Feature: domain Description: VirD4 Location: 6254-7139 bp Feature: domain Description: VirD4 Location: 6254-713 9 bp Feature: gene Location: 7108-7968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbC (pfam04956), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505)