myRT

myRT report for GCA_000981035.1_ASM98103v1

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Seq: LAYJ01000061.1 Catabacter hongkongensis strain HKU16 2806ref_2ab_c26, whole genome shotgun sequence (40113 bp)
Overview 1 RT 1: 24280-32419 bp Neighborhood of RT #1 [24280, 32631] group_II_RT_mat RVT-UG19 SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA Feature: gene Location: 24280-24444 bp Feature: gene Location: 25136-25249 bp Feature: gene Location: 26362-28395 bp Ori: KKI51851.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 26467-26665 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 26467-26665 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 26743-27226 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 26743-27226 bp Feature: gene Location: 28535-28906 bp Feature: gene Location: 28978-32631 bp Ori: KKI51853.1 Feature: domain Description: SpaA Location: 29929-30094 bp Feature: domain Description: SpaA Location: 29929-30094 bp Feature: domain Description: SpaA Location: 30199-30382 bp Feature: domain Description: SpaA Location: 301 99-30382 bp Feature: domain Description: SpaA Location: 30520-30718 bp Feature: domain Description: SpaA Location: 30520-3071 8 bp Feature: domain Description: SpaA Location: 30814-31036 bp Feature: domain Description: SpaA Location: 3081 4-31 036 bp Feature: domain Description: SpaA Location: 31186-31417 bp Feature: domain Description: SpaA Location: 31 1 86-31 41 7 bp Feature: domain Description: SpaA Location: 31600-31759 bp Feature: domain Description: SpaA Location: 31 600-31 759 bp Feature: domain Description: SpaA Location: 31867-32059 bp Feature: domain Description: SpaA Location: 31 867-32059 bp Feature: domain Description: SpaA Location: 32140-32419 bp Feature: domain Description: SpaA Location: 321 40-3241 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG19, SpaA (pfam17802)

Seq: LAYJ01000053.1 Catabacter hongkongensis strain HKU16 2806ref_2ab_c10, whole genome shotgun sequence (86528 bp)
Overview 1 RT 1: 34649-46095 bp Neighborhood of RT #1 [34649, 46166] LPD28 HsdM COG4646 RVT_N RVT-GII GIIM DUF3991 Toprim_2 Feature: gene Location: 34649-35020 bp Ori: KKI51901.1 Feature: domain Description: LPD28 Location: 34673-34976 bp Feature: domain Description: LPD2 8 Location: 34673-34976 bp Feature: gene Location: 35033-41872 bp Ori: KKI51902.1 Feature: domain Description: HsdM Location: 38201-38795 bp Feature: domain Description: HsdM Location: 382 01-38795 bp Feature: domain Description: COG4646 Location: 38816-41444 bp Feature: domain Description: COG4646 Location: 38816-41444 bp Feature: gene Location: 42498-44099 bp Ori: KKI51903.1 Feature: domain Description: RVT_N Location: 42513-42756 bp Feature: domain Description: RVT_N Location: 42 513-42 756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42801-43449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 801-43449 bp Feature: domain Description: GIIM Note: maturase Location: 43503-43734 bp Feature: domain Description: GIIM Note: maturase Location: 43503-43734 bp Feature: gene Location: 44299-45147 bp Feature: gene Location: 45162-46166 bp Ori: KKI51905.1 Feature: domain Description: DUF3991 Location: 45540-45744 bp Feature: domain Description: DUF3991 Location: 45540-45744 bp Feature: domain Description: Toprim_2 Location: 45780-46095 bp Feature: domain Description: Toprim_2 Location: 45780-46095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD28 (pfam18843), HsdM (COG0286), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3991 (pfam13154), Toprim_2 (pfam13155)